Domain Annotation: SCOP/SCOPe Classification SCOP Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
D [auth C]d2rdoc1 All beta proteins SH3-like barrel Translation proteins SH3-like domain C-terminal domain of ribosomal protein L2 C-terminal domain of ribosomal protein L2 (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
D [auth C]d2rdoc2 All beta proteins OB-fold Nucleic acid-binding proteins Cold shock DNA-binding domain-like N-terminal domain of ribosomal protein L2 (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
F [auth E]d2rdoe1 Alpha and beta proteins (a/b) Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4 Ribosomal protein L4 (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
H [auth G]d2rdog1 Alpha and beta proteins (a+b) Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6 Ribosomal protein L6 (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
I [auth J]d2rdoj1 Alpha and beta proteins (a/b) Ribosomal protein L13 Ribosomal protein L13 Ribosomal protein L13 Ribosomal protein L13 (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
J [auth K]d2rdok1 All beta proteins Ribosomal protein L14 Ribosomal protein L14 Ribosomal protein L14 Ribosomal protein L14 (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
O [auth P]d2rdop1 Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
Q [auth R]d2rdor1 All beta proteins L21p-like L21p-like Ribosomal protein L21p Ribosomal protein L21p (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
R [auth S]d2rdos1 Alpha and beta proteins (a+b) Ribosomal protein L22 Ribosomal protein L22 Ribosomal protein L22 Ribosomal protein L22 (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
T [auth U]d2rdou1 All beta proteins SH3-like barrel Translation proteins SH3-like domain Ribosomal proteins L24p and L21e Ribosomal proteins L24 (L24p) (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
V [auth X]d2rdox1 All alpha proteins Long alpha-hairpin Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p) Ribosomal protein L29 (L29p) (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
Y [auth 0]d2rdo01 Small proteins Rubredoxin-like Zn-binding ribosomal proteins Ribosomal protein L32p Ribosomal protein L32p (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
Z [auth 1]d2rdo11 Low resolution protein structures Ribosome and ribosomal fragments Ribosome and ribosomal fragments Ribosome complexes 70S ribosome functional complex (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
K [auth L]d2rdol1 Alpha and beta proteins (a/b) Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e Ribosomal proteins L15p and L18e Ribosomal protein L15 (L15p) (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
L [auth M]d2rdom1 Alpha and beta proteins (a+b) alpha/beta-Hammerhead Ribosomal protein L16p/L10e Ribosomal protein L16p Ribosomal protein L16p (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
M [auth N]d2rdon1 Alpha and beta proteins (a+b) Prokaryotic ribosomal protein L17 Prokaryotic ribosomal protein L17 Prokaryotic ribosomal protein L17 Prokaryotic ribosomal protein L17 (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
N [auth O]d2rdoo1 Alpha and beta proteins (a/b) Ribonuclease H-like motif Translational machinery components Ribosomal protein L18 and S11 Ribosomal protein L18 (L18p) (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
P [auth Q]d2rdoq1 All alpha proteins PABP domain-like Ribosomal protein L20 Ribosomal protein L20 Ribosomal protein L20 (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
S [auth T]d2rdot1 Alpha and beta proteins (a+b) Ribosomal proteins S24e, L23 and L15e Ribosomal proteins S24e, L23 and L15e L23p Ribosomal protein L23 (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
U [auth W]d2rdow1 All beta proteins Barrel-sandwich hybrid Ribosomal L27 protein-like Ribosomal L27 protein Ribosomal protein L27 (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
W [auth Y]d2rdoy1 Alpha and beta proteins (a+b) Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Ribosomal protein L30p/L7e Prokaryotic ribosomal protein L30 (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
X [auth Z]d2rdoz1 Alpha and beta proteins (a+b) L28p-like L28p-like Ribosomal protein L31p Ribosomal protein L31p (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
BA [auth 3]d2rdo31 Alpha and beta proteins (a+b) L35p-like L35p-like Ribosomal protein L35p Ribosomal protein L35p (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
CA [auth 4]d2rdo41 Small proteins Ribosomal protein L36 Ribosomal protein L36 Ribosomal protein L36 Ribosomal protein L36 (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
C [auth V]d2rdov1 All beta proteins Ribosomal protein L25-like Ribosomal protein L25-like Ribosomal protein L25-like Ribosomal protein L25 (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
DA [auth I]d2rdoi1 All alpha proteins DNA/RNA-binding 3-helical bundle Ribosomal protein L11, C-terminal domain Ribosomal protein L11, C-terminal domain Ribosomal protein L11, C-terminal domain (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
DA [auth I]d2rdoi2 Alpha and beta proteins (a+b) Ribosomal L11/L12e N-terminal domain Ribosomal L11/L12e N-terminal domain Ribosomal L11/L12e N-terminal domain Ribosomal protein L11, N-terminal domain (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
EA [auth H]d2rdoh1 Alpha and beta proteins (a+b) Ribosomal protein L9 C-domain Ribosomal protein L9 C-domain Ribosomal protein L9 C-domain Ribosomal protein L9 C-domain (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
EA [auth H]d2rdoh2 Alpha and beta proteins (a+b) MbtH/L9 domain-like L9 N-domain-like Ribosomal protein L9 N-domain Ribosomal protein L9 N-domain (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
HA [auth 8]d2rdo81 Alpha and beta proteins (a+b) RRF/tRNA synthetase additional domain-like Ribosome recycling factor, RRF Ribosome recycling factor, RRF Ribosome recycling factor, RRF (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
E [auth D]d2rdod1 All beta proteins Reductase/isomerase/elongation factor common domain Translation proteins Ribosomal protein L3 Ribosomal protein L3 (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)
G [auth F]d2rdof1 Alpha and beta proteins (a+b) RL5-like RL5-like Ribosomal protein L5 Ribosomal protein L5 (Escherichia coli ) [TaxId: 562 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
D [auth C]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8035393 3000334 SCOP2B (2022-06-29)
D [auth C]SCOP2B SuperfamilyNucleic acid-binding proteins8035394 3000135 SCOP2B (2022-06-29)
F [auth E]SCOP2B SuperfamilyRibosomal protein L48096356 3001146 SCOP2B (2022-06-29)
H [auth G]SCOP2B SuperfamilyRibosomal protein L68035397 3000724 SCOP2B (2022-06-29)
H [auth G]SCOP2B SuperfamilyRibosomal protein L68035398 3000724 SCOP2B (2022-06-29)
I [auth J]SCOP2B SuperfamilyRibosomal protein L138096350 3001134 SCOP2B (2022-06-29)
J [auth K]SCOP2B Superfamily50S Ribosomal protein L14-like8103358 3000433 SCOP2B (2022-06-29)
O [auth P]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8096364 3000334 SCOP2B (2022-06-29)
Q [auth R]SCOP2B Superfamilyl21p-like8096354 3002005 SCOP2B (2022-06-29)
R [auth S]SCOP2B SuperfamilyRibosomal protein L228096336 3001078 SCOP2B (2022-06-29)
T [auth U]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain8096358 3000334 SCOP2B (2022-06-29)
V [auth X]SCOP2B SuperfamilyRibosomal protein L29 (L29p)8096370 3000713 SCOP2B (2022-06-29)
Y [auth 0]SCOP2B SuperfamilyZn-binding ribosomal proteins8096380 3001320 SCOP2B (2022-06-29)
Z [auth 1]SCOP2B SuperfamilyZn-binding ribosomal proteins8096362 3001320 SCOP2B (2022-06-29)
K [auth L]SCOP2B SuperfamilyRibosomal proteins L15p and L18e8070553 3001045 SCOP2B (2022-06-29)
L [auth M]SCOP2B SuperfamilyRibosomal protein L16p/L10e8096366 3000884 SCOP2B (2022-06-29)
M [auth N]SCOP2B SuperfamilyProkaryotic ribosomal protein L178035409 3000995 SCOP2B (2022-06-29)
N [auth O]SCOP2B SuperfamilyTranslational machinery components8032969 3000571 SCOP2B (2022-06-29)
P [auth Q]SCOP2B SuperfamilyRibosomal protein L208096382 3000563 SCOP2B (2022-06-29)
S [auth T]SCOP2B SuperfamilyRibosomal proteins S24e L23 and L15e8035415 3000210 SCOP2B (2022-06-29)
U [auth W]SCOP2B SuperfamilyRibosomal L27 protein-like8096338 3000539 SCOP2B (2022-06-29)
W [auth Y]SCOP2B SuperfamilyRibosomal protein L30p/L7e8096372 3001378 SCOP2B (2022-06-29)
X [auth Z]SCOP2B SuperfamilyL28p-like8032740 3001966 SCOP2B (2022-06-29)
BA [auth 3]SCOP2B SuperfamilyL35p-like8035388 3000790 SCOP2B (2022-06-29)
CA [auth 4]SCOP2B SuperfamilyRibosomal protein L368035391 3001346 SCOP2B (2022-06-29)
C [auth V]SCOP2B SuperfamilyRibosomal protein L25-like8042538 3001161 SCOP2B (2022-06-29)
DA [auth I]SCOP2B SuperfamilyRibosomal L11/L12e N-terminal domain-like8032963 3000950 SCOP2B (2022-06-29)
DA [auth I]SCOP2B SuperfamilyRibosomal protein L11 C-terminal domain8032961 3001186 SCOP2B (2022-06-29)
EA [auth H]SCOP2B SuperfamilyL9 N-domain-like8032960 3000338 SCOP2B (2022-06-29)
EA [auth H]SCOP2B SuperfamilyRibosomal protein L9 C-domain8032958 3000329 SCOP2B (2022-06-29)
FA [auth 9]SCOP2B SuperfamilyRibosomal protein L1p/L10e-like8065348 3001911 SCOP2B (2022-06-29)
HA [auth 8]SCOP2B SuperfamilyRibosome recycling factor RRF8032742 3001524 SCOP2B (2022-06-29)
E [auth D]SCOP2B SuperfamilyTranslational proteins8032955 3000811 SCOP2B (2022-06-29)
G [auth F]SCOP2B SuperfamilyRL5-like8096352 3001709 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
D [auth C]PF00181e2rdoC3 A: beta barrelsX: OB-foldH: Nucleic acid-binding proteins (From Topology)T: Nucleic acid-binding proteinsF: PF00181ECOD (1.6)
D [auth C]PF03947e2rdoC4 A: beta barrelsX: SH3H: SH3T: SH3F: PF03947ECOD (1.6)
F [auth E]PF00573e2rdoE1 A: a/b three-layered sandwichesX: Ribosomal protein L4 (From Topology)H: Ribosomal protein L4 (From Topology)T: Ribosomal protein L4F: PF00573ECOD (1.6)
H [auth G]PF00347e2rdoG2 A: a+b two layersX: Ribosomal protein L6 (From Topology)H: Ribosomal protein L6 (From Topology)T: Ribosomal protein L6F: PF00347ECOD (1.6)
I [auth J]PF00572e2rdoJ1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal protein L13 and L16-A (From Topology)T: Ribosomal protein L13 and L16-AF: PF00572ECOD (1.6)
J [auth K]PF00238e2rdoK1 A: beta barrelsX: Ribosomal protein L14-likeH: Ribosomal protein L14-related (From Topology)T: Ribosomal protein L14-relatedF: PF00238ECOD (1.6)
O [auth P]PF01245e2rdoP1 A: beta barrelsX: SH3H: SH3T: SH3F: PF01245ECOD (1.6)
Q [auth R]PF00829e2rdoR1 A: beta barrelsX: Ribosomal protein L21p (From Topology)H: Ribosomal protein L21p (From Topology)T: Ribosomal protein L21pF: PF00829ECOD (1.6)
R [auth S]PF00237e2rdoS1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Ribosomal protein L22 (From Topology)T: Ribosomal protein L22F: PF00237ECOD (1.6)
T [auth U]PF00467,PF17136e2rdoU1 A: beta barrelsX: SH3H: SH3T: SH3F: PF00467,PF17136ECOD (1.6)
V [auth X]PF00831e2rdoX1 A: alpha bundlesX: Long alpha-hairpinH: Ribosomal protein L29 (L29p) (From Topology)T: Ribosomal protein L29 (L29p)F: PF00831ECOD (1.6)
Y [auth 0]PF01783e2rdo01 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF01783ECOD (1.6)
Z [auth 1]PF00471e2rdo11 A: few secondary structure elementsX: Rubredoxin-likeH: Rubredoxin-relatedT: Rubredoxin-relatedF: PF00471ECOD (1.6)
GA [auth 7]PF03144e2rdo74 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: PF03144ECOD (1.6)
GA [auth 7]PF03764e2rdo71 A: a+b two layersX: Ribosomal protein S5 domain 2-like (From Topology)H: Ribosomal protein S5 domain 2-like (From Topology)T: Ribosomal protein S5 domain 2-likeF: PF03764ECOD (1.6)
GA [auth 7]PF00679e2rdo75 A: a+b two layersX: Alpha-beta plaitsH: EF-G C-terminal domain-like (From Topology)T: EF-G C-terminal domain-likeF: PF00679ECOD (1.6)
GA [auth 7]PF14492e2rdo73 A: a+b two layersX: Alpha-beta plaitsH: EF-G C-terminal domain-like (From Topology)T: EF-G C-terminal domain-likeF: PF14492ECOD (1.6)
GA [auth 7]PF00009e2rdo72 A: a/b three-layered sandwichesX: P-loop domains-likeH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: PF00009ECOD (1.6)
K [auth L]PF00828e2rdoL1 A: a/b three-layered sandwichesX: Ribosomal protein L13/L15p/L18e/L32eH: Ribosomal proteins L15p and L18e (From Topology)T: Ribosomal proteins L15p and L18eF: PF00828ECOD (1.6)
L [auth M]PF00252e2rdoM1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal protein L10eF: PF00252ECOD (1.6)
M [auth N]PF01196e2rdoN1 A: a+b two layersX: Enolase-N/ribosomal proteinH: Prokaryotic ribosomal protein L17 (From Topology)T: Prokaryotic ribosomal protein L17F: PF01196ECOD (1.6)
N [auth O]PF00861e2rdoO1 A: mixed a+b and a/bX: Ribonuclease H-likeH: Ribonuclease H-like (From Topology)T: Ribonuclease H-likeF: PF00861ECOD (1.6)
P [auth Q]PF00453e2rdoQ1 A: alpha arraysX: PABP domain-likeH: Ribosomal protein L20 (From Topology)T: Ribosomal protein L20F: PF00453ECOD (1.6)
S [auth T]PF00276e2rdoT1 A: a+b two layersX: Alpha-beta plaitsH: Ribosomal proteins S24e, L23 and L15e (From Topology)T: Ribosomal proteins S24e, L23 and L15eF: PF00276ECOD (1.6)
U [auth W]PF01016e2rdoW1 A: a+b complex topologyX: alpha/beta-Hammerhead/Barrel-sandwich hybridH: alpha/beta-Hammerhead/Barrel-sandwich hybridT: Ribosomal L27 proteinF: PF01016ECOD (1.6)
W [auth Y]PF00327e2rdoY1 A: a+b two layersX: Ribosomal protein L30p/L7e (From Topology)H: Ribosomal protein L30p/L7e (From Topology)T: Ribosomal protein L30p/L7eF: PF00327ECOD (1.6)
X [auth Z]PF01197e2rdoZ1 A: few secondary structure elementsX: Ribosomal protein L31p (From Topology)H: Ribosomal protein L31p (From Topology)T: Ribosomal protein L31pF: PF01197ECOD (1.6)
AA [auth 2]PF00468e2rdo21 A: extended segmentsX: 50S ribosomal protein L34 (From Topology)H: 50S ribosomal protein L34 (From Topology)T: 50S ribosomal protein L34F: PF00468ECOD (1.6)
BA [auth 3]PF01632e2rdo31 A: a+b two layersX: Ribosomal protein L35p (From Topology)H: Ribosomal protein L35p (From Topology)T: Ribosomal protein L35pF: PF01632ECOD (1.6)
CA [auth 4]PF00444e2rdo41 A: few secondary structure elementsX: Ribosomal protein L36 (From Topology)H: Ribosomal protein L36 (From Topology)T: Ribosomal protein L36F: PF00444ECOD (1.6)
C [auth V]PF01386e2rdoV1 A: beta barrelsX: Ribosomal protein L25-likeH: Ribosomal protein L25-like (From Topology)T: Ribosomal protein L25-likeF: PF01386ECOD (1.6)
DA [auth I]PF00298e2rdoI1 A: alpha arraysX: HTHH: HTHT: Ribosomal protein L11, C-terminal domainF: PF00298ECOD (1.6)
DA [auth I]PF03946e2rdoI2 A: a+b two layersX: Ribosomal protein L11/L12e N-terminal domain-likeH: Ribosomal protein L11/L12e N-terminal domain (From Topology)T: Ribosomal protein L11/L12e N-terminal domainF: PF03946ECOD (1.6)
EA [auth H]PF01281e2rdoH1 A: a+b two layersX: L9 N-domain-likeH: L9 N-domain-like (From Topology)T: L9 N-domain-likeF: PF01281ECOD (1.6)
EA [auth H]PF03948e2rdoH2 A: a+b two layersX: Ribosomal protein L9 C-domain (From Topology)H: Ribosomal protein L9 C-domain (From Topology)T: Ribosomal protein L9 C-domainF: PF03948ECOD (1.6)
FA [auth 9]PF00687e2rdo91 A: a+b two layersX: a+b domain in Ribosomal protein L1 (From Topology)H: a+b domain in Ribosomal protein L1 (From Topology)T: a+b domain in Ribosomal protein L1F: PF00687ECOD (1.6)
FA [auth 9]PF00687e2rdo92 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Rossmann-like domain in Ribosomal protein L1 (From Topology)T: Rossmann-like domain in Ribosomal protein L1F: PF00687ECOD (1.6)
HA [auth 8]PF01765e2rdo81 A: a+b two layersX: RRF/tRNA synthetase additional domain-likeH: Ribosome recycling factor, RRF (From Topology)T: Ribosome recycling factor, RRFF: PF01765ECOD (1.6)
E [auth D]PF00297e2rdoD1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Alanine racemase-CF: PF00297ECOD (1.6)
G [auth F]PF00281,PF00673e2rdoF1 A: a+b two layersX: Ribosomal protein L5 (From Topology)H: Ribosomal protein L5 (From Topology)T: Ribosomal protein L5F: PF00281,PF00673ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
D [auth C]PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domain- Domain
D [auth C]PF00181Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2)Ribosomal Proteins L2, RNA binding domain- Domain
F [auth E]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family
H [auth G]PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6- Domain
I [auth J]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
J [auth K]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23e- Domain
O [auth P]PF01245Ribosomal protein L19 (Ribosomal_L19)Ribosomal protein L19- Family
Q [auth R]PF00829Ribosomal prokaryotic L21 protein (Ribosomal_L21p)Ribosomal prokaryotic L21 protein- Family
R [auth S]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes.Domain
T [auth U]PF17136Ribosomal proteins 50S L24/mitochondrial 39S L24 (ribosomal_L24)Ribosomal proteins 50S L24/mitochondrial 39S L24- Family
T [auth U]PF00467KOW motif (KOW)KOW motif- Family
V [auth X]PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
Y [auth 0]PF01783Ribosomal L32p protein family (Ribosomal_L32p)Ribosomal L32p protein family- Family
Z [auth 1]PF00471Ribosomal protein L33 (Ribosomal_L33)Ribosomal protein L33- Family
GA [auth 7]PF00679Elongation factor G C-terminus (EFG_C)Elongation factor G C-terminusThis domain includes the carboxyl terminal regions of Elongation factor G, elongation factor 2 and some tetracycline resistance proteins and adopt a ferredoxin-like fold.Domain
GA [auth 7]PF00009Elongation factor Tu GTP binding domain (GTP_EFTU)Elongation factor Tu GTP binding domainThis domain contains a P-loop motif, also found in several other families such as Pfam:PF00071, Pfam:PF00025 and Pfam:PF00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains.Domain
GA [auth 7]PF14492Elongation Factor G, domain III (EFG_III)Elongation Factor G, domain IIIThis domain is found in Elongation Factor G. It shares a similar structure with domain V (Pfam:PF00679). Structural studies in drosophila indicate this is domain 3 [1].Domain
GA [auth 7]PF03144Elongation factor Tu domain 2 (GTP_EFTU_D2)Elongation factor Tu domain 2Elongation factor Tu consists of three structural domains, this is the second domain. This domain adopts a beta barrel structure. This the second domain is involved in binding to charged tRNA [1]. This domain is also found in other proteins such as e ...Elongation factor Tu consists of three structural domains, this is the second domain. This domain adopts a beta barrel structure. This the second domain is involved in binding to charged tRNA [1]. This domain is also found in other proteins such as elongation factor G and translation initiation factor IF-2. This domain is structurally related to Pfam:PF03143, and in fact has weak sequence matches to this domain.
Domain
GA [auth 7]PF03764Elongation factor G, domain IV (EFG_IV)Elongation factor G, domain IVThis domain is found in elongation factor G, elongation factor 2 and some tetracycline resistance proteins and adopts a ribosomal protein S5 domain 2-like fold.Domain
K [auth L]PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A- Family
L [auth M]PF00252Ribosomal protein L16p/L10e (Ribosomal_L16)Ribosomal protein L16p/L10e- Domain
M [auth N]PF01196Ribosomal protein L17 (Ribosomal_L17)Ribosomal protein L17- Family
N [auth O]PF00861Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast (Ribosomal_L18p)Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast- Family
P [auth Q]PF00453Ribosomal protein L20 (Ribosomal_L20)Ribosomal protein L20- Family
S [auth T]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
U [auth W]PF01016Ribosomal L27 protein (Ribosomal_L27)Ribosomal L27 protein- Family
W [auth Y]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7.Domain
X [auth Z]PF01197Ribosomal protein L31 (Ribosomal_L31)Ribosomal protein L31- Family
AA [auth 2]PF00468Ribosomal protein L34 (Ribosomal_L34)Ribosomal protein L34- Family
BA [auth 3]PF01632Ribosomal protein L35 (Ribosomal_L35p)Ribosomal protein L35- Family
CA [auth 4]PF00444Ribosomal protein L36 (Ribosomal_L36)Ribosomal protein L36- Domain
C [auth V]PF01386Ribosomal L25p family (Ribosomal_L25p)Ribosomal L25p familyRibosomal protein L25 is an RNA binding protein, that binds 5S rRNA. This family includes Ctc from B. subtilis Swiss:P14194, which is induced by stress.Domain
DA [auth I]PF03946Ribosomal protein L11, N-terminal domain (Ribosomal_L11_N)Ribosomal protein L11, N-terminal domainThe N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain.Domain
DA [auth I]PF00298Ribosomal protein L11, RNA binding domain (Ribosomal_L11)Ribosomal protein L11, RNA binding domain- Domain
EA [auth H]PF01281Ribosomal protein L9, N-terminal domain (Ribosomal_L9_N)Ribosomal protein L9, N-terminal domain- Domain
EA [auth H]PF03948Ribosomal protein L9, C-terminal domain (Ribosomal_L9_C)Ribosomal protein L9, C-terminal domain- Domain
FA [auth 9]PF00687Ribosomal protein L1p/L10e family (Ribosomal_L1)Ribosomal protein L1p/L10e familyThis family includes prokaryotic L1 and eukaryotic L10.Domain
HA [auth 8]PF01765Ribosome recycling factor (RRF)Ribosome recycling factorThe ribosome recycling factor (RRF / ribosome release factor) dissociates the ribosome from the mRNA after termination of translation, and is essential bacterial growth [1]. Thus ribosomes are "recycled" and ready for another round of protein synthe ...The ribosome recycling factor (RRF / ribosome release factor) dissociates the ribosome from the mRNA after termination of translation, and is essential bacterial growth [1]. Thus ribosomes are "recycled" and ready for another round of protein synthesis.
Domain
E [auth D]PF00297Ribosomal protein L3 (Ribosomal_L3)Ribosomal protein L3- Family
G [auth F]PF00281Ribosomal protein L5 (Ribosomal_L5)Ribosomal protein L5- Domain
G [auth F]PF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281.Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
D [auth C]50S ribosomal protein L2
F [auth E]50S ribosomal protein L4
H [auth G]50S ribosomal protein L6
I [auth J]50S ribosomal protein L13
J [auth K]50S ribosomal protein L14
O [auth P]50S ribosomal protein L19
Q [auth R]50S ribosomal protein L21
R [auth S]50S ribosomal protein L22
T [auth U]50S ribosomal protein L24
V [auth X]50S ribosomal protein L29
Y [auth 0]50S ribosomal protein L32
Z [auth 1]50S ribosomal protein L33
GA [auth 7]Elongation factor G
5S RIBOSOMAL RNA---
K [auth L]50S ribosomal protein L15
L [auth M]50S ribosomal protein L16
M [auth N]50S ribosomal protein L17
N [auth O]50S ribosomal protein L18
P [auth Q]50S ribosomal protein L20
S [auth T]50S ribosomal protein L23
23S RIBOSOMAL RNA---
U [auth W]50S ribosomal protein L27
W [auth Y]50S ribosomal protein L30
X [auth Z]50S ribosomal protein L31
AA [auth 2]50S ribosomal protein L34
BA [auth 3]50S ribosomal protein L35
CA [auth 4]50S ribosomal protein L36
C [auth V]50S ribosomal protein L25
DA [auth I]50S ribosomal protein L11
EA [auth H]50S ribosomal protein L9
FA [auth 9]50S ribosomal protein L1
HA [auth 8]Ribosome recycling factor
E [auth D]50S ribosomal protein L3
G [auth F]50S ribosomal protein L5

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
D [auth C]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
D [auth C]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
D [auth C]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
D [auth C]IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
D [auth C]IPR005880Large ribosomal subunit protein uL2, bacterial/organellar-typeFamily
D [auth C]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
D [auth C]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
D [auth C]IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
D [auth C]IPR002171Large ribosomal subunit protein uL2Family
F [auth E]IPR013005Large ribosomal subunit protein uL4-likeFamily
F [auth E]IPR002136Large ribosomal subunit protein uL4Family
F [auth E]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
H [auth G]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
H [auth G]IPR019906Large ribosomal subunit protein uL6, bacterial-typeFamily
H [auth G]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
H [auth G]IPR000702Large ribosomal subunit protein uL6-likeFamily
H [auth G]IPR002358Large ribosomal subunit protein uL6, conserved siteConserved Site
I [auth J]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
I [auth J]IPR005822Large ribosomal subunit protein uL13Family
I [auth J]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
I [auth J]IPR005823Large ribosomal subunit protein uL13, bacterial-typeFamily
J [auth K]IPR005745Large ribosomal subunit protein uL14, bacterial-typeFamily
J [auth K]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
J [auth K]IPR000218Large ribosomal subunit protein uL14Family
J [auth K]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
O [auth P]IPR001857Large ribosomal subunit protein bL19Family
O [auth P]IPR038657Large ribosomal subunit protein bL19 superfamilyHomologous Superfamily
O [auth P]IPR018257Large ribosomal subunit protein bL19, conserved siteConserved Site
O [auth P]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
Q [auth R]IPR028909Large ribosomal subunit protein bL21-likeFamily
Q [auth R]IPR001787Large ribosomal subunit protein bL21Family
Q [auth R]IPR036164Large ribosomal subunit protein bL21-like superfamilyHomologous Superfamily
Q [auth R]IPR018258Large ribosomal subunit protein bL21, conserved siteConserved Site
R [auth S]IPR047867Large ribosomal subunit protein uL22, bacterial/organelle-typeFamily
R [auth S]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
R [auth S]IPR001063Large ribosomal subunit protein uL22Family
R [auth S]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
R [auth S]IPR005727Large ribosomal subunit protein uL22, bacterial/chloroplast-typeFamily
T [auth U]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
T [auth U]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
T [auth U]IPR003256Large ribosomal subunit protein uL24Family
T [auth U]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
T [auth U]IPR005824KOWDomain
T [auth U]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
V [auth X]IPR001854Large ribosomal subunit protein uL29Family
V [auth X]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
V [auth X]IPR018254Large ribosomal subunit protein uL29, conserved siteConserved Site
Y [auth 0]IPR002677Large ribosomal subunit protein bL32Family
Y [auth 0]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
Y [auth 0]IPR044957Large ribosomal subunit protein bL32, bacterial typeFamily
Z [auth 1]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
Z [auth 1]IPR038584Large ribosomal subunit protein bL33 superfamilyHomologous Superfamily
Z [auth 1]IPR001705Large ribosomal subunit protein bL33Family
Z [auth 1]IPR018264Large ribosomal subunit protein bL33, conserved siteConserved Site
GA [auth 7]IPR005517Translation elongation factor EFG/EF2, domain IVDomain
GA [auth 7]IPR004540Translation elongation factor EFG/EF2Family
GA [auth 7]IPR000795Translational (tr)-type GTP-binding domainDomain
GA [auth 7]IPR000640Elongation factor EFG, domain V-likeDomain
GA [auth 7]IPR031157Tr-type G domain, conserved siteConserved Site
GA [auth 7]IPR009022Elongation factor G, domain IIIDomain
GA [auth 7]IPR035647EF-G domain III/V-likeHomologous Superfamily
GA [auth 7]IPR041095Elongation Factor G, domain IIDomain
GA [auth 7]IPR004161Translation elongation factor EFTu-like, domain 2Domain
GA [auth 7]IPR047872Elongation factor G, domain IVDomain
GA [auth 7]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
GA [auth 7]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
GA [auth 7]IPR005225Small GTP-binding protein domainDomain
GA [auth 7]IPR035649EFG, domain VDomain
GA [auth 7]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
GA [auth 7]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
K [auth L]IPR005749Large ribosomal subunit protein uL15, bacterial-typeFamily
K [auth L]IPR021131Large ribosomal subunit protein uL15/eL18Domain
K [auth L]IPR030878Large ribosomal subunit protein uL15Family
K [auth L]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
K [auth L]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
L [auth M]IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
L [auth M]IPR020798Large ribosomal subunit protein uL16, conserved siteConserved Site
L [auth M]IPR000114Large ribosomal subunit protein uL16, bacterial-typeFamily
L [auth M]IPR016180Large ribosomal subunit protein uL16 domainDomain
L [auth M]IPR047873Large ribosomal subunit protein uL16Family
M [auth N]IPR036373Large ribosomal subunit protein bL17 superfamilyHomologous Superfamily
M [auth N]IPR047859Large ribosomal subunit protein bL17, conserved siteConserved Site
M [auth N]IPR000456Large ribosomal subunit protein bL17Family
N [auth O]IPR005484Large ribosomal subunit protein uL18Family
N [auth O]IPR004389Large ribosomal subunit protein uL18, bacterial-typeFamily
P [auth Q]IPR035566Ribosomal protein bL20, C-terminalHomologous Superfamily
P [auth Q]IPR005813Large ribosomal subunit protein bL20Family
S [auth T]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
S [auth T]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
S [auth T]IPR001014Large ribosomal subunit protein uL23, conserved siteConserved Site
S [auth T]IPR013025Large ribosomal subunit protein uL23-likeFamily
U [auth W]IPR001684Large ribosomal subunit protein bL27Family
U [auth W]IPR018261Large ribosomal subunit protein bL27, conserved siteConserved Site
W [auth Y]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
W [auth Y]IPR005996Large ribosomal subunit protein uL30, bacterial-typeFamily
W [auth Y]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
W [auth Y]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
X [auth Z]IPR002150Large ribosomal subunit protein bL31 type A/BFamily
X [auth Z]IPR027491Large ribosomal subunit protein bL31 type AFamily
X [auth Z]IPR034704Large ribosomal subunit protein bL28/bL31-like superfamilyHomologous Superfamily
X [auth Z]IPR042105Large ribosomal subunit protein bL31 superfamilyHomologous Superfamily
AA [auth 2]IPR020939Large ribosomal subunit protein bL34, conserved siteConserved Site
AA [auth 2]IPR000271Large ribosomal subunit protein bL34Family
BA [auth 3]IPR021137Large ribosomal subunit protein bL35-likeFamily
BA [auth 3]IPR018265Large ribosomal subunit protein bL35, conserved siteConserved Site
BA [auth 3]IPR001706Large ribosomal subunit protein bL35Family
BA [auth 3]IPR037229Large ribosomal subunit protein bL35 superfamilyHomologous Superfamily
CA [auth 4]IPR000473Large ribosomal subunit protein bL36Family
CA [auth 4]IPR035977Large ribosomal subunit protein bL36 superfamilyHomologous Superfamily
C [auth V]IPR020055Ribosomal protein bL25, short-formFamily
C [auth V]IPR029751Large ribosomal subunit protein bL25, L25 domainDomain
C [auth V]IPR020056Large ribosomal subunit protein bL25/Gln-tRNA synthetase, N-terminalHomologous Superfamily
C [auth V]IPR011035Large ribosomal subunit protein bL25/Gln-tRNA synthetase, anti-codon-binding domain superfamilyHomologous Superfamily
DA [auth I]IPR020785Large ribosomal subunit protein uL11, conserved siteConserved Site
DA [auth I]IPR020783Large ribosomal subunit protein uL11, C-terminalDomain
DA [auth I]IPR000911Ribosomal protein uL11Family
DA [auth I]IPR006519Large ribosomal subunit protein uL11, bacterial-typeFamily
DA [auth I]IPR020784Large ribosomal subunit protein uL11, N-terminalDomain
DA [auth I]IPR036769Large ribosomal subunit protein uL11, C-terminal domain superfamilyHomologous Superfamily
DA [auth I]IPR036796Large ribosomal subunit protein uL11, N-terminal domain superfamilyHomologous Superfamily
EA [auth H]IPR036935Large ribosomal subunit protein bL9, N-terminal domain superfamilyHomologous Superfamily
EA [auth H]IPR020069Large ribosomal subunit protein bL9, C-terminalDomain
EA [auth H]IPR020070Large ribosomal subunit protein bL9, N-terminalDomain
EA [auth H]IPR009027Large ribosomal subunit protein bL9/RNase H1, N-terminalHomologous Superfamily
EA [auth H]IPR020594Large ribosomal subunit protein bL9, bacteria/chloroplastFamily
EA [auth H]IPR036791Large ribosomal subunit protein bL9, C-terminal domain superfamilyHomologous Superfamily
EA [auth H]IPR000244Large ribosomal subunit protein bL9Family
FA [auth 9]IPR005878Large ribosomal subunit protein uL1, bacterial-typeFamily
FA [auth 9]IPR023674Ribosomal protein uL1-likeHomologous Superfamily
FA [auth 9]IPR023673Large ribosomal subunit protein uL1, conserved siteConserved Site
FA [auth 9]IPR016095Large ribosomal subunit protein uL1, 3-layer alpha/beta-sandwich domainHomologous Superfamily
FA [auth 9]IPR002143Large ribosomal subunit protein uL1Family
FA [auth 9]IPR028364Ribosomal protein uL1/ribosomal biogenesis proteinFamily
HA [auth 8]IPR023584Ribosome recycling factor domainDomain
HA [auth 8]IPR036191RRF superfamilyHomologous Superfamily
HA [auth 8]IPR002661Ribosome recycling factorFamily
E [auth D]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
E [auth D]IPR019927Large ribosomal subunit protein uL3, bacterial/organelle-typeFamily
E [auth D]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
E [auth D]IPR000597Large ribosomal subunit protein uL3Family
G [auth F]IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
G [auth F]IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
G [auth F]IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
G [auth F]IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
G [auth F]IPR020930Large ribosomal subunit protein uL5, bacterial-typeFamily
G [auth F]IPR002132Large ribosomal subunit protein uL5Family