CRYSTAL STRUCTURE OF A MUTANT IEK CLASS II MHC MOLECULE
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| H | SCOP2B Superfamily | MHC antigen-recognition domain | 8055626 | 3000521 | SCOP2B (2022-06-29) |
| H | SCOP2B Superfamily | Immunoglobulin (Ig) domain-like | 8054713 | 3000071 | SCOP2B (2022-06-29) |
| F | SCOP2B Superfamily | Immunoglobulin (Ig) domain-like | 8054713 | 3000071 | SCOP2B (2022-06-29) |
| F | SCOP2B Superfamily | MHC antigen-recognition domain | 8055626 | 3000521 | SCOP2B (2022-06-29) |
| D | SCOP2B Superfamily | MHC antigen-recognition domain | 8055626 | 3000521 | SCOP2B (2022-06-29) |
| D | SCOP2B Superfamily | Immunoglobulin (Ig) domain-like | 8054713 | 3000071 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | MHC antigen-recognition domain | 8055626 | 3000521 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | Immunoglobulin (Ig) domain-like | 8054713 | 3000071 | SCOP2B (2022-06-29) |
| G | SCOP2B Superfamily | Immunoglobulin (Ig) domain-like | 8054673 | 3000071 | SCOP2B (2022-06-29) |
| G | SCOP2B Superfamily | MHC antigen-recognition domain | 8033118 | 3000521 | SCOP2B (2022-06-29) |
| E | SCOP2B Superfamily | Immunoglobulin (Ig) domain-like | 8054673 | 3000071 | SCOP2B (2022-06-29) |
| E | SCOP2B Superfamily | MHC antigen-recognition domain | 8033118 | 3000521 | SCOP2B (2022-06-29) |
| C | SCOP2B Superfamily | MHC antigen-recognition domain | 8033118 | 3000521 | SCOP2B (2022-06-29) |
| C | SCOP2B Superfamily | Immunoglobulin (Ig) domain-like | 8054673 | 3000071 | SCOP2B (2022-06-29) |
| A | SCOP2B Superfamily | Immunoglobulin (Ig) domain-like | 8054673 | 3000071 | SCOP2B (2022-06-29) |
| A | SCOP2B Superfamily | MHC antigen-recognition domain | 8033118 | 3000521 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| H | Copper-bind | e1i3rH1 | A: alpha bundles | X: Cloacin translocation domain | H: beta-Prism I | T: beta-Prism I | F: Copper-bind | ECOD (develop294) |
| H | L_protein_N | e1i3rH2 | A: alpha bundles | X: Family A G protein-coupled receptor-like | H: beta-sandwich domain in metalloprotease stcE | T: Restriction endonuclease-like | F: L_protein_N | ECOD (develop294) |
| F | Copper-bind | e1i3rF1 | A: alpha bundles | X: Cloacin translocation domain | H: beta-Prism I | T: beta-Prism I | F: Copper-bind | ECOD (develop294) |
| F | L_protein_N | e1i3rF2 | A: alpha bundles | X: Family A G protein-coupled receptor-like | H: beta-sandwich domain in metalloprotease stcE | T: Restriction endonuclease-like | F: L_protein_N | ECOD (develop294) |
| D | Copper-bind | e1i3rD1 | A: alpha bundles | X: Cloacin translocation domain | H: beta-Prism I | T: beta-Prism I | F: Copper-bind | ECOD (develop294) |
| D | L_protein_N | e1i3rD2 | A: alpha bundles | X: Family A G protein-coupled receptor-like | H: beta-sandwich domain in metalloprotease stcE | T: Restriction endonuclease-like | F: L_protein_N | ECOD (develop294) |
| B | Copper-bind | e1i3rB1 | A: alpha bundles | X: Cloacin translocation domain | H: beta-Prism I | T: beta-Prism I | F: Copper-bind | ECOD (develop294) |
| B | L_protein_N | e1i3rB2 | A: alpha bundles | X: Family A G protein-coupled receptor-like | H: beta-sandwich domain in metalloprotease stcE | T: Restriction endonuclease-like | F: L_protein_N | ECOD (develop294) |
| G | Copper-bind | e1i3rG1 | A: alpha bundles | X: Cloacin translocation domain | H: beta-Prism I | T: beta-Prism I | F: Copper-bind | ECOD (develop294) |
| G | MHC_I_3 | e1i3rG2 | A: alpha bundles | X: EGF-like | H: LDL receptor-like module | T: LDL receptor-like module | F: MHC_I_3 | ECOD (develop294) |
| E | Copper-bind | e1i3rE1 | A: alpha bundles | X: Cloacin translocation domain | H: beta-Prism I | T: beta-Prism I | F: Copper-bind | ECOD (develop294) |
| E | MHC_I_3 | e1i3rE2 | A: alpha bundles | X: EGF-like | H: LDL receptor-like module | T: LDL receptor-like module | F: MHC_I_3 | ECOD (develop294) |
| C | Copper-bind | e1i3rC1 | A: alpha bundles | X: Cloacin translocation domain | H: beta-Prism I | T: beta-Prism I | F: Copper-bind | ECOD (develop294) |
| C | MHC_I_3 | e1i3rC2 | A: alpha bundles | X: EGF-like | H: LDL receptor-like module | T: LDL receptor-like module | F: MHC_I_3 | ECOD (develop294) |
| A | Copper-bind | e1i3rA1 | A: alpha bundles | X: Cloacin translocation domain | H: beta-Prism I | T: beta-Prism I | F: Copper-bind | ECOD (develop294) |
| A | MHC_I_3 | e1i3rA2 | A: alpha bundles | X: EGF-like | H: LDL receptor-like module | T: LDL receptor-like module | F: MHC_I_3 | ECOD (develop294) |
Domain Annotation: CATH CATH Database Homepage
IMGT Antibody Annotation IMGT Database Homepage
| Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
|---|---|---|---|---|---|---|---|---|
| pMHC84 | PEPTIDE-II-BETA | Mus musculus (house mouse) | H2-EB1k | G-DOMAIN G-BETA, C-LIKE-DOMAIN C-LIKE | MH | MH2-ALPHA_PEPTIDE-BETA | IMGT (202610-0) | |
| pMHC84 | II-ALPHA | Mus musculus (house mouse) | MH2-AAe, H2-EAck, H2-EAk, H2-EA | G-DOMAIN G-ALPHA, C-LIKE-DOMAIN C-LIKE | MH | MH2-ALPHA_PEPTIDE-BETA | IMGT (202610-0) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF00969 | Class II histocompatibility antigen, beta domain (MHC_II_beta) | Class II histocompatibility antigen, beta domain | Domain | ||
| PF07654 | Immunoglobulin C1-set domain (C1-set) | Immunoglobulin C1-set domain | Domain | ||
| PF07654 | Immunoglobulin C1-set domain (C1-set) | Immunoglobulin C1-set domain | Domain | ||
| PF00993 | Class II histocompatibility antigen, alpha domain (MHC_II_alpha) | Class II histocompatibility antigen, alpha domain | Domain |














