7X8V

Cooperative regulation of PBI1 and MAPKs controls WRKY45 transcription factor in rice immunity


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.84 Å
  • R-Value Free: 0.224 
  • R-Value Work: 0.193 
  • R-Value Observed: 0.195 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Cooperative regulation of PBI1 and MAPKs controls WRKY45 transcription factor in rice immunity.

Ichimaru, K.Yamaguchi, K.Harada, K.Nishio, Y.Hori, M.Ishikawa, K.Inoue, H.Shigeta, S.Inoue, K.Shimada, K.Yoshimura, S.Takeda, T.Yamashita, E.Fujiwara, T.Nakagawa, A.Kojima, C.Kawasaki, T.

(2022) Nat Commun 13: 2397-2397

  • DOI: https://doi.org/10.1038/s41467-022-30131-y
  • Primary Citation of Related Structures:  
    7X8V

  • PubMed Abstract: 

    The U-box type ubiquitin ligase PUB44 positively regulates pattern-triggered immunity in rice. Here, we identify PBI1, a protein that interacts with PUB44. Crystal structure analysis indicates that PBI1 forms a four-helix bundle structure. PBI1 also interacts with WRKY45, a master transcriptional activator of rice immunity, and negatively regulates its activity. PBI1 is degraded upon perception of chitin, and this is suppressed by silencing of PUB44 or expression of XopP, indicating that PBI1 degradation depends on PUB44. These data suggest that PBI1 suppresses WRKY45 activity when cells are in an unelicited state, and during chitin signaling, PUB44-mediated degradation of PBI1 leads to activation of WRKY45. In addition, chitin-induced MAP kinase activation is required for WRKY45 activation and PBI1 degradation. These results demonstrate that chitin-induced activation of WRKY45 is regulated by the cooperation between MAP kinase-mediated phosphorylation and PUB44-mediated PBI1 degradation.


  • Organizational Affiliation

    Department of Advanced Bioscience, Graduate School of Agriculture, Kindai University, Nakamachi, Nara, 631-8505, Japan.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Os01g0156300 protein
A, B, C, D, E
A, B, C, D, E, F
195Oryza sativa Japonica GroupMutation(s): 0 
Gene Names: Os01g0156300P0011G08.27
UniProt
Find proteins for Q5ZCD5 (Oryza sativa subsp. japonica)
Explore Q5ZCD5 
Go to UniProtKB:  Q5ZCD5
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ5ZCD5
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.84 Å
  • R-Value Free: 0.224 
  • R-Value Work: 0.193 
  • R-Value Observed: 0.195 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 89.932α = 90
b = 89.78β = 106.56
c = 107.088γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling
SHELXCDphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Japan Society for the Promotion of Science (JSPS)Japan19H00945
Japan Society for the Promotion of Science (JSPS)Japan18H04789
Japan Society for the Promotion of Science (JSPS)JapanJP15K18649
Japan Society for the Promotion of Science (JSPS)Japan20H03191
Japan Society for the Promotion of Science (JSPS)Japan19H04856

Revision History  (Full details and data files)

  • Version 1.0: 2022-04-06
    Type: Initial release
  • Version 1.1: 2022-06-01
    Changes: Database references