7VU7

The Solution structure of the C-terminal domain from flagelliform spidroin


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 200 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

C-Terminal Domains of Spider Silk Proteins Having Divergent Structures but Conserved Functional Roles.

Li, X.Fan, J.S.Shi, M.Lai, C.C.Li, J.Meng, Q.Yang, D.

(2022) Biomacromolecules 23: 1643-1651

  • DOI: https://doi.org/10.1021/acs.biomac.1c01513
  • Primary Citation of Related Structures:  
    7VU7

  • PubMed Abstract: 

    Spider silk is self-assembled from silk proteins or spidroins. C-terminal domains (CTDs) of various types of spidroins are relatively conserved in amino acid sequences and are suggested to adopt similar structures and perform similar functional roles in spidroin storage and silk formation. Here, we solved the structure of the CTD from a capture-spiral silk protein (CTD Fl ) and characterized its stability and fibril formation in the presence and absence of a reducing agent at different pH values. CTD Fl adopts a dimeric structure with 8 helices, but the CTDs of other types of spidroins exist in a domain-swapped dimeric structure with 10 helices. Despite the structural differences, CTD Fl is pH-responsive in stability and fibril formation, similar to the CTDs from minor and major ampullate spidroins. Thus, the functional role of CTDs in silk fiber formation seems conserved. Comparing wild-type CTD Fl and its mutants, we found that the pH-responsive behavior results from the protonation of H76, which is conserved from different spider species. In addition, the fibril formation rate of CTD Fl correlates with its instability, suggesting that structural changes are involved in fibril formation.


  • Organizational Affiliation

    Department of Biological Sciences, National University of Singapore, 14 Science Drive 4, Singapore 117543.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Flagelliform fibroin
A, B
108Araneus ventricosusMutation(s): 0 
UniProt
Find proteins for A0A4Y2M0V6 (Araneus ventricosus)
Explore A0A4Y2M0V6 
Go to UniProtKB:  A0A4Y2M0V6
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A4Y2M0V6
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 200 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)Singapore31570721
Ministry of Education (MoE, Singapore)SingaporeR-154-000-A50-114

Revision History  (Full details and data files)

  • Version 1.0: 2022-04-06
    Type: Initial release
  • Version 1.1: 2022-04-20
    Changes: Database references
  • Version 1.2: 2023-06-14
    Changes: Other