7QIL

Solution NMR structure of halophilic DnaE intein


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 20 
  • Conformers Submitted: 20 
  • Selection Criteria: all calculated structures submitted 

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Literature

The NMR structure of the engineered halophilic DnaE intein for segmental isotopic labeling using conditional protein splicing.

Heikkinen, H.A.Aranko, A.S.Iwai, H.

(2022) J Magn Reson (1969 338: 107195-107195

  • DOI: https://doi.org/10.1016/j.jmr.2022.107195
  • Primary Citation of Related Structures:  
    7QIL

  • PubMed Abstract: 

    Protein trans-splicing catalyzed by split inteins has been used for segmental isotopic labeling of proteins for alleviating the complexity of NMR signals. Whereas inteins spontaneously trigger protein splicing upon protein folding, inteins from extremely halophilic organisms require a high salinity condition to induce protein splicing. We designed and created a salt-inducible intein from the widely used DnaE intein from Nostoc punctiforme by introducing 29 mutations, which required a lower salt concentration than naturally occurring halo-obligate inteins. We determined the NMR solution structure of the engineered salt-inducible DnaE intein in 2 M NaCl, showing the essentially identical three-dimensional structure to the original one, albeit it unfolds without salts. The NMR structure of a halo-obligate intein under high salinity suggests that the stabilization of the active folded conformation is not a mere result of various intramolecular interactions but the subtle energy balance from the complex interactions, including the solvation energy, which involve waters, ions, co-solutes, and protein polypeptide chains.


  • Organizational Affiliation

    Institute of Biotechnology, University of Helsinki, PO Box 65, Helsinki, FIN-00014, Finland.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
DnaE intein140NostocMutation(s): 0 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 20 
  • Conformers Submitted: 20 
  • Selection Criteria: all calculated structures submitted 

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Academy of Finland131413
Academy of Finland137995
Academy of Finland277335
Novo Nordisk FoundationNNF17OC0027550

Revision History  (Full details and data files)

  • Version 1.0: 2022-04-27
    Type: Initial release