7OD9

Crystal structure of activated CheY fused to the C-terminal domain of CheF


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.30 Å
  • R-Value Free: 0.307 
  • R-Value Work: 0.249 
  • R-Value Observed: 0.252 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Structural insights into the mechanism of archaellar rotational switching.

Altegoer, F.Quax, T.E.F.Weiland, P.Nussbaum, P.Giammarinaro, P.I.Patro, M.Li, Z.Oesterhelt, D.Grininger, M.Albers, S.V.Bange, G.

(2022) Nat Commun 13: 2857-2857

  • DOI: https://doi.org/10.1038/s41467-022-30358-9
  • Primary Citation of Related Structures:  
    7OD9, 7OVP

  • PubMed Abstract: 

    Signal transduction via phosphorylated CheY towards the flagellum and the archaellum involves a conserved mechanism of CheY phosphorylation and subsequent conformational changes within CheY. This mechanism is conserved among bacteria and archaea, despite substantial differences in the composition and architecture of archaellum and flagellum, respectively. Phosphorylated CheY has higher affinity towards the bacterial C-ring and its binding leads to conformational changes in the flagellar motor and subsequent rotational switching of the flagellum. In archaea, the adaptor protein CheF resides at the cytoplasmic face of the archaeal C-ring formed by the proteins ArlCDE and interacts with phosphorylated CheY. While the mechanism of CheY binding to the C-ring is well-studied in bacteria, the role of CheF in archaea remains enigmatic and mechanistic insights are absent. Here, we have determined the atomic structures of CheF alone and in complex with activated CheY by X-ray crystallography. CheF forms an elongated dimer with a twisted architecture. We show that CheY binds to the C-terminal tail domain of CheF leading to slight conformational changes within CheF. Our structural, biochemical and genetic analyses reveal the mechanistic basis for CheY binding to CheF and allow us to propose a model for rotational switching of the archaellum.


  • Organizational Affiliation

    Philipps-University Marburg, Center for Synthetic Microbiology (SYNMIKRO) & Faculty of Chemistry, Karl-von-Frisch-Straße 14, 35043, Marburg, Germany. altegoer@hhu.de.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Response regulator receiver proteinA [auth B],
B [auth A]
142Methanococcus maripaludis X1Mutation(s): 0 
Gene Names: GYY_05385
UniProt
Find proteins for G0H061 (Methanococcus maripaludis X1)
Explore G0H061 
Go to UniProtKB:  G0H061
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupG0H061
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
C-terminal domain of CheF from Methanococcus maripaludisC,
D [auth F]
115Methanococcus maripaludis X1Mutation(s): 0 
Gene Names: GYY_05390
UniProt
Find proteins for G0H062 (Methanococcus maripaludis X1)
Explore G0H062 
Go to UniProtKB:  G0H062
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupG0H062
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.30 Å
  • R-Value Free: 0.307 
  • R-Value Work: 0.249 
  • R-Value Observed: 0.252 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 56.29α = 90
b = 70.87β = 91.603
c = 59.82γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
XDSdata reduction
XSCALEdata scaling
PHENIXphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2022-04-27
    Type: Initial release
  • Version 1.1: 2022-06-08
    Changes: Database references
  • Version 1.2: 2024-01-31
    Changes: Data collection, Refinement description