7LXS

Structural and Biochemical Insight into Assembly of Molecular Motors Involved in Viral DNA Packaging

PDB DOI: https://doi.org/10.2210/pdb7LXS/pdb

Classification: VIRAL PROTEIN
Organism(s): Bacteriophage sp.
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2021-03-04 Released: 2022-03-09
Deposition Author(s): Ortega, M.E.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.21 Å
R-Value Free: 0.142
R-Value Work: 0.140
R-Value Observed: 0.140

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Structural and Biochemical Insight into Assembly of Molecular Motors Involved in Viral DNA Packaging

Ortega, M.E., Randriamihaja, A., Rossen, N., Brannon, J.P., Marquez, C., West, R., Dabbagh, S., Robles, R., LeGue, A.

To be published.

Macromolecule Content

Total Structure Weight: 47.03 kDa
Atom Count: 3,296
Modelled Residue Count: 440
Deposited Residue Count: 440
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Terminase, small subunit	A, B, C, D, E A, B, C, D, E, F, G, H	55	Bacteriophage sp.	Mutation(s): 0
UniProt
Find proteins for Q8ZMZ2 (Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)) Explore Q8ZMZ2 Go to UniProtKB: Q8ZMZ2
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q8ZMZ2
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.21 Å
R-Value Free: 0.142
R-Value Work: 0.140
R-Value Observed: 0.140
Space Group: P 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 24.747	α = 90
b = 50.761	β = 88.36
c = 68.527	γ = 90.11

Software Package:

Software Name	Purpose
REFMAC	refinement
HKL-2000	data scaling
PDB_EXTRACT	data extraction
HKL-2000	data reduction
PHASER	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2022-03-09

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2022-03-09
Type: Initial release
Version 1.1: 2023-10-18
Changes: Data collection, Refinement description

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.