7FIW

Crystal structure of the complex formed by Wolbachia cytoplasmic incompatibility factors CidAwMel(ST) and CidBND1-ND2 from wPip(Pel)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.16 Å
  • R-Value Free: 0.220 
  • R-Value Work: 0.192 
  • R-Value Observed: 0.193 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Crystal Structures of Wolbachia CidA and CidB Reveal Determinants of Bacteria-induced Cytoplasmic Incompatibility and Rescue.

Wang, H.Xiao, Y.Chen, X.Zhang, M.Sun, G.Wang, F.Wang, L.Zhang, H.Zhang, X.Yang, X.Li, W.Wei, Y.Yao, D.Zhang, B.Li, J.Cui, W.Wang, F.Chen, C.Shen, W.Su, D.Bai, F.Huang, J.Ye, S.Zhang, L.Ji, X.Wang, W.Wang, Z.Hochstrasser, M.Yang, H.

(2022) Nat Commun 13: 1608-1608

  • DOI: https://doi.org/10.1038/s41467-022-29273-w
  • Primary Citation of Related Structures:  
    7FIT, 7FIU, 7FIV, 7FIW

  • PubMed Abstract: 

    Cytoplasmic incompatibility (CI) results when Wolbachia bacteria-infected male insects mate with uninfected females, leading to embryonic lethality. "Rescue" of viability occurs if the female harbors the same Wolbachia strain. CI is caused by linked pairs of Wolbachia genes called CI factors (CifA and CifB). The co-evolution of CifA-CifB pairs may account in part for the incompatibility patterns documented in insects infected with different Wolbachia strains, but the molecular mechanisms remain elusive. Here, we use X-ray crystallography and AlphaFold to analyze the CI factors from Wolbachia strain wMel called CidA wMel and CidB wMel . Substituting CidA wMel interface residues with those from CidA wPip (from strain wPip) enables the mutant protein to bind CidB wPip and rescue CidB wPip -induced yeast growth defects, supporting the importance of CifA-CifB interaction in CI rescue. Sequence divergence in CidA wPip and CidB wPip proteins affects their pairwise interactions, which may help explain the complex incompatibility patterns of mosquitoes infected with different wPip strains.


  • Organizational Affiliation

    School of Life Sciences, Tianjin University, Tianjin, China.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
ULP_PROTEASE domain-containing protein769Wolbachia endosymbiont of Culex quinquefasciatus PelMutation(s): 0 
Gene Names: WP0283
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations
Expand
  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
bacteria factor 4,CidA I(Zeta/1) protein482Wolbachia endosymbiont of Drosophila melanogasterWolbachia endosymbiont of Culex pipiensMutation(s): 9 
Gene Names: WD_0631
UniProt
Find proteins for A0A5B8WHG9 (Wolbachia endosymbiont of Culex pipiens)
Explore A0A5B8WHG9 
Go to UniProtKB:  A0A5B8WHG9
Find proteins for Q73HD5 (Wolbachia pipientis wMel)
Explore Q73HD5 
Go to UniProtKB:  Q73HD5
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupsA0A5B8WHG9Q73HD5
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.16 Å
  • R-Value Free: 0.220 
  • R-Value Work: 0.192 
  • R-Value Observed: 0.193 
  • Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 82.357α = 90
b = 98.69β = 90
c = 184.847γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
HKL-2000data scaling
PDB_EXTRACTdata extraction
HKL-2000data reduction
PHENIXphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China81772204

Revision History  (Full details and data files)

  • Version 1.0: 2022-04-06
    Type: Initial release
  • Version 1.1: 2023-11-29
    Changes: Data collection, Refinement description