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Download EndnoteCrystal Structure of NSP15 Endoribonuclease from SARS CoV-2.
Kim, Y., Jedrzejczak, R., Maltseva, N.I., Endres, M., Godzik, A., Michalska, K., Joachimiak, A.(2020) Biorxiv --: --
6VWW
Crystal Structure of NSP15 Endoribonuclease from SARS CoV-2.
- DOI: 10.2210/pdb6VWW/pdb
- Classification: VIRAL PROTEIN
- Expression System: Escherichia coli BL21(DE3)
- Deposited: 2020-02-20 Released: 2020-03-04
- Funding Organization(s): National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.2 Å
- R-Value Free: 0.178
- R-Value Work: 0.158
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
Macromolecules
Small Molecules
| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| CL Query on CL | B | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | Ligand Interaction | |
| GOL Query on GOL | A, B | GLYCEROL GLYCERIN; PROPANE-1,2,3-TRIOL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | Ligand Interaction | |
| MG Query on MG | A | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |  | Ligand Interaction | |
| ACY Query on ACY | A, B | ACETIC ACID C2 H4 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-N |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.2 Å
- R-Value Free: 0.178
- R-Value Work: 0.158
- Space Group: P 63
Unit Cell:
| Length (Å) | Angle (°) |
|---|---|
| a = 150.539 | α = 90.00 |
| b = 150.539 | β = 90.00 |
| c = 111.310 | γ = 120.00 |
| Software Name | Purpose |
|---|---|
| HKL-3000 | phasing |
| HKL-3000 | data scaling |
| MOLREP | phasing |
| PHENIX | refinement |
| HKL-3000 | data reduction |
Entry History & Funding Information
Deposition Data
- Deposited Date: 2020-02-20
- Released Date: 2020-03-04
- Deposition Author(s): Kim, Y., Jedrzejczak, R., Maltseva, N., Endres, M., Godzik, A., Michalska, K., Joachimiak, A., Center for Structural Genomics of Infectious Diseases (CSGID)
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID) | United States | -- |
