6TNT

SUMOylated apoAPC/C with repositioned APC2 WHB domain


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.78 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Molecular mechanisms of APC/C release from spindle assembly checkpoint inhibition by APC/C SUMOylation.

Yatskevich, S.Kroonen, J.S.Alfieri, C.Tischer, T.Howes, A.C.Clijsters, L.Yang, J.Zhang, Z.Yan, K.Vertegaal, A.C.O.Barford, D.

(2021) Cell Rep 34: 108929-108929

  • DOI: https://doi.org/10.1016/j.celrep.2021.108929
  • Primary Citation of Related Structures:  
    6TNT

  • PubMed Abstract: 

    The anaphase-promoting complex/cyclosome (APC/C) is an E3 ubiquitin ligase that controls cell cycle transitions. Its regulation by the spindle assembly checkpoint (SAC) is coordinated with the attachment of sister chromatids to the mitotic spindle. APC/C SUMOylation on APC4 ensures timely anaphase onset and chromosome segregation. To understand the structural and functional consequences of APC/C SUMOylation, we reconstituted SUMOylated APC/C for electron cryo-microscopy and biochemical analyses. SUMOylation of the APC/C causes a substantial rearrangement of the WHB domain of APC/C's cullin subunit (APC2 WHB ). Although APC/C Cdc20 SUMOylation results in a modest impact on normal APC/C Cdc20 activity, repositioning APC2 WHB reduces the affinity of APC/C Cdc20 for the mitotic checkpoint complex (MCC), the effector of the SAC. This attenuates MCC-mediated suppression of APC/C Cdc20 activity, allowing for more efficient ubiquitination of APC/C Cdc20 substrates in the presence of the MCC. Thus, SUMOylation stimulates the reactivation of APC/C Cdc20 when the SAC is silenced, contributing to timely anaphase onset.


  • Organizational Affiliation

    MRC Laboratory of Molecular Biology, Cambridge Biomedical Campus, Francis Crick Avenue, Cambridge CB2 0QH, UK.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Anaphase-promoting complex subunit 11,944Homo sapiensMutation(s): 0 
Gene Names: ANAPC1TSG24
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Go to UniProtKB:  Q9H1A4
PHAROS:  Q9H1A4
GTEx:  ENSG00000153107 
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UniProt GroupQ9H1A4
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Anaphase-promoting complex subunit 1184Homo sapiensMutation(s): 0 
Gene Names: ANAPC11HSPC214
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Find proteins for Q9NYG5 (Homo sapiens)
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PHAROS:  Q9NYG5
GTEx:  ENSG00000141552 
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UniProt GroupQ9NYG5
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Cell division cycle protein 23 homolog
C, P
597Homo sapiensMutation(s): 0 
Gene Names: CDC23ANAPC8
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PHAROS:  Q9UJX2
GTEx:  ENSG00000094880 
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UniProt GroupQ9UJX2
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Anaphase-promoting complex subunit 15121Homo sapiensMutation(s): 0 
Gene Names: ANAPC15C11orf51HSPC020
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Find proteins for P60006 (Homo sapiens)
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PHAROS:  P60006
GTEx:  ENSG00000110200 
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UniProt GroupP60006
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Anaphase-promoting complex subunit 16110Homo sapiensMutation(s): 0 
Gene Names: ANAPC16C10orf104CENP-27
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GTEx:  ENSG00000166295 
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
Cell division cycle protein 27 homolog
F, H
824Homo sapiensMutation(s): 0 
Gene Names: CDC27ANAPC3D0S1430ED17S978E
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Find proteins for P30260 (Homo sapiens)
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PHAROS:  P30260
GTEx:  ENSG00000004897 
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
Anaphase-promoting complex subunit CDC26G,
R [auth W]
85Homo sapiensMutation(s): 0 
Gene Names: CDC26ANAPC12C9orf17
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GTEx:  ENSG00000176386 
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Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
Anaphase-promoting complex subunit 4808Homo sapiensMutation(s): 0 
Gene Names: ANAPC4APC4
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GTEx:  ENSG00000053900 
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Entity ID: 9
MoleculeChains Sequence LengthOrganismDetailsImage
Cell division cycle protein 16 homolog
J, K
620Homo sapiensMutation(s): 0 
Gene Names: CDC16ANAPC6
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GTEx:  ENSG00000130177 
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Entity ID: 10
MoleculeChains Sequence LengthOrganismDetailsImage
Anaphase-promoting complex subunit 10185Homo sapiensMutation(s): 0 
Gene Names: ANAPC10APC10
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Find proteins for Q9UM13 (Homo sapiens)
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PHAROS:  Q9UM13
GTEx:  ENSG00000164162 
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Entity ID: 11
MoleculeChains Sequence LengthOrganismDetailsImage
Anaphase-promoting complex subunit 1374Homo sapiensMutation(s): 0 
Gene Names: ANAPC13
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GTEx:  ENSG00000129055 
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Entity ID: 12
MoleculeChains Sequence LengthOrganismDetailsImage
Anaphase-promoting complex subunit 2822Homo sapiensMutation(s): 0 
Gene Names: ANAPC2APC2KIAA1406
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GTEx:  ENSG00000176248 
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Entity ID: 13
MoleculeChains Sequence LengthOrganismDetailsImage
Anaphase-promoting complex subunit 5755Homo sapiensMutation(s): 0 
Gene Names: ANAPC5APC5
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GTEx:  ENSG00000089053 
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Entity ID: 14
MoleculeChains Sequence LengthOrganismDetailsImage
UNIDENTIFIED PEPTIDEQ [auth T]15unidentifiedMutation(s): 0 
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Entity ID: 15
MoleculeChains Sequence LengthOrganismDetailsImage
Anaphase-promoting complex subunit 7S [auth X],
T [auth Y]
599Homo sapiensMutation(s): 0 
Gene Names: ANAPC7APC7
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Find proteins for Q9UJX3 (Homo sapiens)
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PHAROS:  Q9UJX3
GTEx:  ENSG00000196510 
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UniProt GroupQ9UJX3
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Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.78 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Medical Research Council (MRC, United Kingdom)United KingdomMC_UP_1201/6
Cancer Research UKUnited KingdomC576/A14109

Revision History  (Full details and data files)

  • Version 1.0: 2021-01-13
    Type: Initial release
  • Version 1.1: 2021-07-28
    Changes: Database references