X-ray structure of the unliganded uridine phosphorylase from Vibrio cholerae at 1.22A
Prokofev, I.I., Balaev, V.V., Gabdoulkhakov, A.G., Betzel, C., Lashkov, A.A.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Uridine phosphorylase | 253 | Vibrio cholerae | Mutation(s): 0  Gene Names:  udp, udp_1, B2J67_05455, B2J68_05210, B2J71_05165, BFX32_04820, BTY66_05555, CEF09_03900, DN30_1909, EN12_05055... EC: 2.4.2.3 | ||
UniProt | |||||
Find proteins for Q9K4U1 (Vibrio cholerae) Explore Q9K4U1  Go to UniProtKB:  Q9K4U1 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q9K4U1 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 3 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
GOL Query on GOL | G [auth A] I [auth B] J [auth C] M [auth D] N [auth D] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N | |||
MG Query on MG | L [auth C] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N | |||
NA Query on NA | H [auth A], K [auth C], P [auth E] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 92.94 | α = 90 |
b = 92.94 | β = 90 |
c = 140.231 | γ = 120 |
Software Name | Purpose |
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PHENIX | refinement |
XSCALE | data scaling |
PHASER | phasing |
PDB_EXTRACT | data extraction |
XDS | data reduction |
Funding Organization | Location | Grant Number |
---|---|---|
Grant of the President of Russian Federation | Russian Federation | MK-9246.2016.3. |