Structure of Recombinant Dwarf Sperm Whale Myoglobin (Oxy)
Samuel, P.P., Miller, M.D., Xu, W., Alvarado, S., Phillips Jr., G.N., Olson, J.S.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Myoglobin | 154 | Kogia sima | Mutation(s): 0  Gene Names: MB EC: 1.11.1 (UniProt), 1.7 (UniProt) | ||
UniProt | |||||
Find proteins for P02184 (Kogia sima) Explore P02184  Go to UniProtKB:  P02184 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P02184 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 4 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
HEM Query on HEM | C [auth A], Q [auth B] | PROTOPORPHYRIN IX CONTAINING FE C34 H32 Fe N4 O4 KABFMIBPWCXCRK-RGGAHWMASA-L | |||
CD Query on CD | E [auth A] F [auth A] G [auth A] H [auth A] I [auth A] | CADMIUM ION Cd WLZRMCYVCSSEQC-UHFFFAOYSA-N | |||
ACT Query on ACT | K [auth A] L [auth A] M [auth A] N [auth A] O [auth A] | ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M | |||
OXY Query on OXY | D [auth A], R [auth B] | OXYGEN MOLECULE O2 MYMOFIZGZYHOMD-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 85.995 | α = 90 |
b = 85.995 | β = 90 |
c = 109.01 | γ = 90 |
Software Name | Purpose |
---|---|
PHENIX | refinement |
XDS | data reduction |
XDS | data scaling |
Aimless | data scaling |
PHASER | phasing |
PDB_EXTRACT | data extraction |
Funding Organization | Location | Grant Number |
---|---|---|
Robert A. Welch Foundation | United States | C-0612 |
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) | United States | R01-GM115261 |