5Z6R

SPASTIN AAA WITH ATP

• PDB DOI: https://doi.org/10.2210/pdb5Z6R/pdb

• Classification: HYDROLASE
• Organism(s): Homo sapiens
• Expression System: Escherichia coli 'BL21-Gold(DE3)pLysS AG
• Mutation(s): Yes 


• Deposited: 2018-01-25 Released: 2019-01-30 
• Deposition Author(s): Lin, Z., Wang, C., Shen, Y.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 3.00 Å
• R-Value Free: 0.279 
• R-Value Work: 0.215 
• R-Value Observed: 0.219 

Literature

The Aaa Family Protein Spastin Severs A Microtubule

Lin, Z., Wang, C., Shen, Y.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: gel filtration

Macromolecule Content

• Total Structure Weight: 43.25 kDa 
• Atom Count: 2,022 
• Modelled Residue Count: 273 
• Deposited Residue Count: 392 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Spastin	A	392	Homo sapiens	Mutation(s): 1  Gene Names: SPAST, ADPSP, FSP2, KIAA1083, SPG4 EC: 3.6.4.3
UniProt & NIH Common Fund Data Resources
Find proteins for Q9UBP0 (Homo sapiens) Explore Q9UBP0  Go to UniProtKB:  Q9UBP0
PHAROS:  Q9UBP0 GTEx:  ENSG00000021574

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
ATP	B [auth A]	ADENOSINE-5'-TRIPHOSPHATE C10 H16 N5 O13 P3 ZKHQWZAMYRWXGA-KQYNXXCUSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 3.00 Å
• R-Value Free: 0.279 
• R-Value Work: 0.215 
• R-Value Observed: 0.219 
• Space Group: P 6₅

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 87.257	α = 90
b = 87.257	β = 90
c = 88.961	γ = 120

Software Package:

Software Name	Purpose
HKL-2000	data scaling
PHASER	phasing
PHENIX	refinement
HKL-2000	data reduction

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2019-01-30 
Deposition Author(s): Lin, Z., Wang, C., Shen, Y.

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Funding Organization	Location	Grant Number
	China	--

Revision History  

• Version 1.0: 2019-01-30
  Type: Initial release
  
• Version 1.1: 2024-03-27
  Changes: Data collection, Database references