5TV2

Crystal structure of a fragment (1-405) of an elongation factor G from Vibrio vulnificus CMCP6

PDB DOI: https://doi.org/10.2210/pdb5TV2/pdb

Classification: NUCLEAR PROTEIN
Organism(s): Vibrio vulnificus CMCP6
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2016-11-07 Released: 2016-11-23
Deposition Author(s): Filippova, E.V., Minasov, G., Shuvalova, L., Cardona-Correa, A., Dubrovska, I., Grimshaw, S., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.60 Å
R-Value Free: 0.253
R-Value Work: 0.179
R-Value Observed: 0.182

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of a fragment (1-405) of an elongation factor G from Vibrio vulnificus CMCP6

Filippova, E.V., Minasov, G., Shuvalova, L., Cardona-Correa, A., Dubrovska, I., Grimshaw, S., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)

To be published.

Macromolecule Content

Total Structure Weight: 45.26 kDa
Atom Count: 3,135
Modelled Residue Count: 365
Deposited Residue Count: 405
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Elongation factor G	A	405	Vibrio vulnificus CMCP6	Mutation(s): 0 Gene Names: fusA, VV1_1338
UniProt
Find proteins for Q8DCQ8 (Vibrio vulnificus (strain CMCP6)) Explore Q8DCQ8 Go to UniProtKB: Q8DCQ8
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q8DCQ8
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.60 Å
R-Value Free: 0.253
R-Value Work: 0.179
R-Value Observed: 0.182
Space Group: P 1 2₁ 1
Diffraction Data: https://doi.org/10.18430/M35TV2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 59.678	α = 90
b = 54.496	β = 116.58
c = 65.319	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
HKL-2000	data scaling
PHENIX	phasing
HKL-2000	data reduction

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2016-11-23

Deposition Author(s):

Filippova, E.V.

Cardona-Correa, A.

Center for Structural Genomics of Infectious Diseases (CSGID)

Revision History (Full details and data files)

Version 1.0: 2016-11-23
Type: Initial release
Version 1.1: 2023-10-04
Changes: Data collection, Database references, Refinement description

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.