Download MendeleyCrystal structure of Bacillus subtilis EngA in complex with phosphate ion and GMPPNP
da Silveira Tome, C., Foucher, A.E., Jault, J.M., Housset, D.To be published.
5M7H
Crystal structure of Bacillus subtilis EngA in complex with phosphate ion and GMPPNP
- PDB DOI: https://doi.org/10.2210/pdb5M7H/pdb
- Classification: HYDROLASE
- Organism(s): Bacillus subtilis subsp. subtilis str. 168
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2016-10-27 Released: 2017-12-20
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 3.15 Å
- R-Value Free: 0.318
- R-Value Work: 0.221
- R-Value Observed: 0.226
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| GTPase Der | 436 | Bacillus subtilis subsp. subtilis str. 168 | Mutation(s): 0 Gene Names: der, engA, yphC, BSU22840 |  | |
UniProt | |||||
Find proteins for P50743 (Bacillus subtilis (strain 168)) Explore P50743 Go to UniProtKB: P50743 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P50743 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| GNP Query on GNP | C [auth A] | PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER C10 H17 N6 O13 P3 UQABYHGXWYXDTK-UUOKFMHZSA-N |  | ||
| PO4 Query on PO4 | B [auth A], E [auth A] | PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K |  | ||
| K Query on K | D [auth A] | POTASSIUM ION K NPYPAHLBTDXSSS-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 3.15 Å
- R-Value Free: 0.318
- R-Value Work: 0.221
- R-Value Observed: 0.226
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 50.93 | α = 90 |
| b = 63.88 | β = 97.34 |
| c = 62.45 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| XDS | data reduction |
| XSCALE | data scaling |
| PHASER | phasing |
Entry History
Deposition Data
- Released Date: 2017-12-20 Deposition Author(s): da Silveira Tome, C., Foucher, A.E., Jault, J.M., Housset, D.
Revision History (Full details and data files)
- Version 1.0: 2017-12-20
Type: Initial release - Version 1.1: 2018-01-24
Changes: Source and taxonomy - Version 1.2: 2024-01-17
Changes: Data collection, Database references, Refinement description
