5BYP

Crystal structure of an uncharacterized protein (BACEGG_01585) from Bacteroides eggerthii DSM 20697 at 2.60 A resolution

• PDB DOI: https://doi.org/10.2210/pdb5BYP/pdb

• Classification: UNKNOWN FUNCTION
• Organism(s): Bacteroides eggerthii DSM 20697
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2015-06-10 Released: 2015-07-08 
• Deposition Author(s): Joint Center for Structural Genomics (JCSG)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.60 Å
• R-Value Free: 0.300 
• R-Value Work: 0.247 
• R-Value Observed: 0.249 

Literature

Crystal structure of an uncharacterized protein (BACEGG_01585) from Bacteroides eggerthii DSM 20697 at 2.60 A resolution

Joint Center for Structural Genomics (JCSG)

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 29.76 kDa 
• Atom Count: 1,957 
• Modelled Residue Count: 242 
• Deposited Residue Count: 254 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Putative uncharacterized protein	A, B	127	Bacteroides eggerthii DSM 20697	Mutation(s): 0  Gene Names: BACEGG_01585

Small Molecules

Modified Residues  1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE	A, B	L-PEPTIDE LINKING	C5 H11 N O2 Se		MET

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.60 Å
• R-Value Free: 0.300 
• R-Value Work: 0.247 
• R-Value Observed: 0.249 
• Space Group: I 4₁ 2 2
• Diffraction Data: https://doi.org/10.18430/M35BYP

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 64.8	α = 90
b = 64.8	β = 90
c = 235.93	γ = 90

Software Package:

Software Name	Purpose
PDB_EXTRACT	data extraction
XDS	data scaling
XSCALE	data scaling
BUSTER-TNT	refinement
SHELX	phasing
SHARP	phasing
BUSTER	refinement
SHELXD	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2015-07-08 
Deposition Author(s): Joint Center for Structural Genomics (JCSG)

Revision History  

• Version 1.0: 2015-07-08
  Type: Initial release
  
• Version 1.1: 2017-11-22
  Changes: Derived calculations, Refinement description, Source and taxonomy
• Version 1.2: 2018-01-24
  Changes: Database references
• Version 1.3: 2023-02-01
  Changes: Database references