5AQ0

The structure of the Transthyretin-like domain of the first catalytic domain of the HUMAN Carboxypeptidase D


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 0.95 Å
  • R-Value Free: 0.175 
  • R-Value Work: 0.153 
  • R-Value Observed: 0.154 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

The Structure of the Ttldomain of the Human Carboxypeptidase D

Gallego, P.Garcia-Pardo, J.Berenguer, E.Lorenzo, J.Aviles, F.X.Ventura, S.Reverter, D.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
CARBOXYPEPTIDASE D AB82Homo sapiensMutation(s): 0 
Gene Names: CPD
EC: 3.4.17.22
Find proteins for O75976 (Homo sapiens)
Explore O75976 
Go to UniProtKB:  O75976
NIH Common Fund Data Resources
PHAROS:  O75976
Protein Feature View
Expand
  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
GOL
Query on GOL

Download Ideal Coordinates CCD File 
B
GLYCEROL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
 Ligand Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 0.95 Å
  • R-Value Free: 0.175 
  • R-Value Work: 0.153 
  • R-Value Observed: 0.154 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 39.773α = 90
b = 46.051β = 90.18
c = 42.73γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
XDSdata reduction
CCP4Idata scaling
MOLREPphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2016-09-28
    Type: Initial release