4U1E

Crystal structure of the eIF3b-CTD/eIF3i/eIF3g-NTD translation initiation complex


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.00 Å
  • R-Value Free: 0.216 
  • R-Value Work: 0.186 
  • R-Value Observed: 0.187 

wwPDB Validation   3D Report Full Report



Literature

Molecular Architecture of the 40SeIF1eIF3 Translation Initiation Complex.

Erzberger, J.P.Stengel, F.Pellarin, R.Zhang, S.Schaefer, T.Aylett, C.H.Cimermancic, P.Boehringer, D.Sali, A.Aebersold, R.Ban, N.

(2014) Cell 158: 1123-1135

  • DOI: 10.1016/j.cell.2014.07.044
  • Primary Citation of Related Structures:  
    3J8B, 3J8C, 4U1C, 4U1D, 4U1E, 4U1F

  • PubMed Abstract: 
  • Eukaryotic translation initiation requires the recruitment of the large, multiprotein eIF3 complex to the 40S ribosomal subunit. We present X-ray structures of all major components of the minimal, six-subunit Saccharomyces cerevisiae eIF3 core. These ...

    Eukaryotic translation initiation requires the recruitment of the large, multiprotein eIF3 complex to the 40S ribosomal subunit. We present X-ray structures of all major components of the minimal, six-subunit Saccharomyces cerevisiae eIF3 core. These structures, together with electron microscopy reconstructions, cross-linking coupled to mass spectrometry, and integrative structure modeling, allowed us to position and orient all eIF3 components on the 40S⋅eIF1 complex, revealing an extended, modular arrangement of eIF3 subunits. Yeast eIF3 engages 40S in a clamp-like manner, fully encircling 40S to position key initiation factors on opposite ends of the mRNA channel, providing a platform for the recruitment, assembly, and regulation of the translation initiation machinery. The structures of eIF3 components reported here also have implications for understanding the architecture of the mammalian 43S preinitiation complex and the complex of eIF3, 40S, and the hepatitis C internal ribosomal entry site RNA.


    Organizational Affiliation

    Department of Biology, Institute of Molecular Biology and Biophysics, ETH Zurich, Otto-Stern-Weg 5, 8093 Zurich, Switzerland. Electronic address: ban@mol.biol.ethz.ch.



Macromolecules
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Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Eukaryotic translation initiation factor 3 subunit II347Saccharomyces cerevisiae YJM789Mutation(s): 0 
Gene Names: TIF34SCY_4321
Find proteins for A6ZMK5 (Saccharomyces cerevisiae (strain YJM789))
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Go to UniProtKB:  A6ZMK5
Protein Feature View
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  • Reference Sequence
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Entity ID: 2
MoleculeChainsSequence LengthOrganismDetailsImage
Eukaryotic translation initiation factor 3 subunit BB47Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: PRT1CDC63YOR361C
Find proteins for P06103 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
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Go to UniProtKB:  P06103
Protein Feature View
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  • Reference Sequence
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Entity ID: 3
MoleculeChainsSequence LengthOrganismDetailsImage
Eukaryotic translation initiation factor 3 subunit GG138Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: TIF35YDR429CD9461.16
Find proteins for Q04067 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore Q04067 
Go to UniProtKB:  Q04067
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.00 Å
  • R-Value Free: 0.216 
  • R-Value Work: 0.186 
  • R-Value Observed: 0.187 
  • Space Group: C 2 2 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 54.27α = 90
b = 130.29β = 90
c = 192.92γ = 90
Software Package:
Software NamePurpose
XDSdata reduction
XSCALEdata scaling
PDB_EXTRACTdata extraction
PHENIXrefinement

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
European Research CouncilSwitzerland250071

Revision History 

  • Version 1.0: 2014-09-10
    Type: Initial release