4M0I

CRYSTAL STRUCTURE OF SYNTHETIC HIV-1 CAPSID C-TERMINAL DOMAIN (CTD) C198S mutant

PDB DOI: https://doi.org/10.2210/pdb4M0I/pdb

Classification: VIRAL PROTEIN
Organism(s): Human immunodeficiency virus 1
Mutation(s): Yes

Deposited: 2013-08-01 Released: 2014-12-17
Deposition Author(s): Howell, K., Tolbert, W.D., Pazgier, M., Lu, W.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.80 Å
R-Value Free: 0.294
R-Value Work: 0.236
R-Value Observed: 0.239

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Molecular basis of disulfide bonding-regulated HIV-1 capsid assembly

Howell, K., Li, C., Tolbert, W.D., Beckett, D., Pazgier, M., Lu, W.

To be published.

Macromolecule Content

Total Structure Weight: 9.51 kDa
Atom Count: 567
Modelled Residue Count: 71
Deposited Residue Count: 86
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
HIV-1 CAPSID PROTEIN	A	86	Human immunodeficiency virus 1	Mutation(s): 1
UniProt
Find proteins for Q71B91 (Human immunodeficiency virus 1) Explore Q71B91 Go to UniProtKB: Q71B91
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q71B91
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.80 Å
R-Value Free: 0.294
R-Value Work: 0.236
R-Value Observed: 0.239
Space Group: I 4₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 59.001	α = 90
b = 59.001	β = 90
c = 61.176	γ = 90

Software Package:

Software Name	Purpose
HKL-2000	data collection
PHASER	phasing
REFMAC	refinement
HKL-2000	data reduction
HKL-2000	data scaling

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2014-12-17

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2014-12-17
Type: Initial release
Version 1.1: 2023-09-20
Changes: Data collection, Database references, Refinement description

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.