Download MendeleyX-ray structure of NifS-like protein from Rickettsia africae ESF-5
Seattle Structural Genomics Center for Infectious Disease (SSGCID), Abendroth, J., Sankaran, B., Fox III, D., Lorimer, D., Edwards, T.E.To be published.
4IXO
X-ray structure of NifS-like protein from Rickettsia africae ESF-5
- DOI: 10.2210/pdb4IXO/pdb
- Classification: PROTEIN BINDING
- Organism(s): Rickettsia africae ESF-5
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): No
- Deposited: 2013-01-27 Released: 2013-02-27
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.20 Å
- R-Value Free: 0.205
- R-Value Work: 0.162
- R-Value Observed: 0.164
wwPDB Validation 3D Report Full Report
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| NifS-like protein | A, B | 380 | Rickettsia africae ESF-5 | Mutation(s): 0 Gene Names: spl1, RAF_ORF0675 EC: 2.8.1.7 |  |
Find proteins for C3PNQ7 (Rickettsia africae (strain ESF-5)) Explore C3PNQ7 Go to UniProtKB: C3PNQ7 | |||||
Protein Feature ViewExpand | |||||
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Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| EDO Query on EDO | A, B | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | Ligand Interaction | |
| CA Query on CA | B | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |  | Ligand Interaction | |
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| LLP Query on LLP | A,B | L-PEPTIDE LINKING | C14 H22 N3 O7 P |  | LYS |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.20 Å
- R-Value Free: 0.205
- R-Value Work: 0.162
- R-Value Observed: 0.164
- Space Group: P 1 21 1
- Diffraction Data DOI: 10.18430/M34IXO Protein Diffraction
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 57.02 | α = 90 |
| b = 91.02 | β = 93.72 |
| c = 72.62 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHASER | phasing |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| BOS | data collection |
| XDS | data reduction |
| XSCALE | data scaling |
Entry History
Deposition Data
- Deposited Date: 2013-01-27
- Released Date: 2013-02-27 Deposition Author(s): Seattle Structural Genomics Center for Infectious Disease (SSGCID)
