Macromolecule Content

Total Structure Weight: 169.86 kDa
Atom Count: 11992
Residue Count: 1456
Unique protein chains: 1

4DTC

Crystal Structure of DPP-IV with Compound C5

DOI: 10.2210/pdb4DTC/pdb

Classification: HYDROLASE/HYDROLASE INHIBITOR
Organism(s): Homo sapiens
Expression System: Homo sapiens
Mutation(s): No

Deposited: 2012-02-21 Released: 2013-02-27
Deposition Author(s): Xiong, B., Zhu, L.R., Chen, D.Q., Zhao, Y.L., Jiang, F., Shen, J.K.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 3.00 Å
R-Value Free: 0.268
R-Value Work: 0.206
R-Value Observed: 0.209

wwPDB Validation 3D Report Full Report

Literature

Crystal Structure of DPP-IV with Compound C5

Xiong, B., Zhu, L.R., Chen, D.Q., Zhao, Y.L., Jiang, F., Shen, J.K.

To be published.

Macromolecules

Find similar proteins by:

(by identity cutoff) | Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Dipeptidyl peptidase 4	A, B	728	Homo sapiens	Mutation(s): 0 Gene Names: DPP4, ADCP2, CD26 EC: 3.4.14.5
Find proteins for P27487 (Homo sapiens) Explore P27487 Go to UniProtKB: P27487
NIH Common Fund Data Resources
PHAROS: P27487 GTEx: ENSG00000197635
Protein Feature View Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
D5C Query on D5C Download Ideal Coordinates CCD File SDF format, chain C [A] SDF format, chain D [B] MOL2 format, chain C [A] MOL2 format, chain D [B]	A, B	N-[(3R)-3-amino-4-(2,4,5-trifluorophenyl)butyl]-3'-(trifluoromethyl)biphenyl-4-carboxamide C₂₄ H₂₀ F₆ N₂ O UPWUIPKOGKXOGK-IBGZPJMESA-N		Ligand Interaction

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 3.00 Å
R-Value Free: 0.268
R-Value Work: 0.206
R-Value Observed: 0.209
Space Group: P 3₂

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 80.466	α = 90
b = 80.466	β = 90
c = 290.901	γ = 120

Software Package:

Software Name	Purpose
SCALEPACK	data scaling
PHASER	phasing
REFMAC	refinement
PDB_EXTRACT	data extraction

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Deposited Date: 2012-02-21
Released Date: 2013-02-27

Deposition Author(s):

Revision History

Version 1.0: 2013-02-27
Type: Initial release

RCSB PDB is funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.