3WWJ

Crystal structure of an engineered sitagliptin-producing transaminase, ATA-117-Rd11


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.213 
  • R-Value Work: 0.168 

wwPDB Validation 3D Report Full Report


This is version 1.1 of the entry. See complete history

Literature

A new target region for changing the substrate specificity of amine transaminases.

Guan, L.J.Ohtsuka, J.Okai, M.Miyakawa, T.Mase, T.Zhi, Y.Hou, F.Ito, N.Iwasaki, A.Yasohara, Y.Tanokura, M.

(2015) Sci Rep 5: 10753-10753


Macromolecules

Find similar proteins by: Sequence  |  Structure

Entity ID: 1
MoleculeChainsSequence LengthOrganismDetails
(R)-amine transaminase
A, B, C, D, E, F, G, H, I, J, K, L
330Arthrobacter sp. KNK168Mutation(s): 28 
Gene Names: TAS
Find proteins for F7J696 (Arthrobacter sp. KNK168)
Go to UniProtKB:  F7J696
Small Molecules
Ligands 1 Unique
IDChainsName / Formula / InChI Key2D Diagram3D Interactions
PLP
Query on PLP

Download SDF File 
Download CCD File 
A, B, C, D, E, F, G, H, I, J, K, L
PYRIDOXAL-5'-PHOSPHATE
VITAMIN B6 Phosphate
C8 H10 N O6 P
NGVDGCNFYWLIFO-UHFFFAOYSA-N
 Ligand Interaction
Modified Residues  1 Unique
IDChainsTypeFormula2D DiagramParent
CSO
Query on CSO
A, B, C, D, E, F, G, H, I, J, K, L
L-PEPTIDE LINKINGC3 H7 N O3 SCYS
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.213 
  • R-Value Work: 0.168 
  • Space Group: P 1 21 1
Unit Cell:
Length (Å)Angle (°)
a = 82.010α = 90.00
b = 133.540β = 100.41
c = 195.540γ = 90.00
Software Package:
Software NamePurpose
XDSdata reduction
XSCALEdata scaling
XDSdata scaling
REFMACrefinement
MOLREPphasing

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2015-08-12
    Type: Initial release
  • Version 1.1: 2018-11-21
    Type: Data collection, Database references