3U0J

Crystal structure of ADP-ribosyltransferase HopU1 of Pseudomonas syringae pv. Tomato DC3000


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.70 Å
  • R-Value Free: 0.212 
  • R-Value Work: 0.179 
  • R-Value Observed: 0.180 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Structure function analysis of an ADP-ribosyltransferase type III effector and its RNA-binding target in plant immunity

Jeong, B.-R.Lin, Y.Joe, A.Guo, M.Korneli, C.Yang, H.Wang, P.Yu, M.Cerny, R.L.Staiger, D.Alfano, J.R.Xu, Y.

(2011) J Biol Chem 286: 43272-43281

  • DOI: https://doi.org/10.1074/jbc.M111.290122
  • Primary Citation of Related Structures:  
    3U0J

  • PubMed Abstract: 

    The Pseudomonas syringae type III effector HopU1 is a mono-ADP-ribosyltransferase that is injected into plant cells by the type III protein secretion system. Inside the plant cell it suppresses immunity by modifying RNA-binding proteins including the glycine-rich RNA-binding protein GRP7. The crystal structure of HopU1 at 2.7-Å resolution reveals two unique protruding loops, L1 and L4, not found in other mono-ADP-ribosyltransferases. Site-directed mutagenesis demonstrates that these loops are essential for substrate recognition and enzymatic activity. HopU1 ADP-ribosylates the conserved arginine 49 of GRP7, and this reduces the ability of GRP7 to bind RNA in vitro. In vivo, expression of GRP7 with Arg-49 replaced with lysine does not complement the reduced immune responses of the Arabidopsis thaliana grp7-1 mutant demonstrating the importance of this residue for GRP7 function. These data provide mechanistic details how HopU1 recognizes this novel type of substrate and highlights the role of GRP7 in plant immunity.


  • Organizational Affiliation

    Center for Plant Science Innovation and the Department of Plant Pathology, University of Nebraska, Lincoln, Nebraska 68588-0660, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Type III effector HopU1A [auth B],
B [auth A]
270Pseudomonas syringae pv. tomato str. DC3000Mutation(s): 0 
Gene Names: hopU1PSPTO_0501
UniProt
Find proteins for Q88A91 (Pseudomonas syringae pv. tomato (strain ATCC BAA-871 / DC3000))
Explore Q88A91 
Go to UniProtKB:  Q88A91
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ88A91
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.70 Å
  • R-Value Free: 0.212 
  • R-Value Work: 0.179 
  • R-Value Observed: 0.180 
  • Space Group: P 43
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 92.558α = 90
b = 92.558β = 90
c = 101.626γ = 90
Software Package:
Software NamePurpose
HKL-2000data collection
SOLVEphasing
PHENIXrefinement
HKL-2000data reduction
HKL-2000data scaling

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2011-11-02
    Type: Initial release
  • Version 1.1: 2013-07-03
    Changes: Database references
  • Version 1.2: 2024-03-20
    Changes: Data collection, Database references