Macromolecule Content

Total Structure Weight: 106.93 kDa
Atom Count: 8261
Modelled Residue Count: 908
Deposited Residue Count: 944
Unique protein chains: 1

3ORH

Human guanidinoacetate N-methyltransferase with SAH

DOI: 10.2210/pdb3ORH/pdb
Entry: 3ORH supersedes: 1ZX0

Classification: TRANSFERASE
Organism(s): Homo sapiens
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2010-09-07 Released: 2010-09-15
Deposition Author(s): Dong, A., Wu, H., Zeng, H., Loppnau, P., Sundstrom, M., Arrowsmith, C.H., Edwards, A.M., Bochkarev, A., Plotnikov, A.N., Structural Genomics Consortium (SGC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.86 Å
R-Value Free: 0.236
R-Value Work: 0.209

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

The crystal structure of human guanidinoacetate N-methyltransferase with SAH

Wu, H., Dong, A., Zeng, H., Loppnau, P., Sundstrom, M., Arrowsmith, C.H., Edwards, A.M., Bochkarev, A., Plotnikov, A.N.

To be published.

Macromolecules

Find similar proteins by:

(by identity cutoff) | Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Guanidinoacetate N-methyltransferase	A, B, C, D	236	Homo sapiens	Mutation(s): 0 Gene Names: GAMT EC: 2.1.1.2
Find proteins for Q14353 (Homo sapiens) Explore Q14353 Go to UniProtKB: Q14353
NIH Common Fund Data Resources
PHAROS: Q14353 GTEx: ENSG00000130005
Protein Feature View Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
SAH Query on SAH Download Ideal Coordinates CCD File SDF format, chain E [A] SDF format, chain F [B] SDF format, chain G [C] SDF format, chain H [D] MOL2 format, chain E [A] MOL2 format, chain F [B] MOL2 format, chain G [C] MOL2 format, chain H [D]	A, B, C, D	S-ADENOSYL-L-HOMOCYSTEINE C₁₄ H₂₀ N₆ O₅ S ZJUKTBDSGOFHSH-WFMPWKQPSA-N		Ligand Interaction

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.86 Å
R-Value Free: 0.236
R-Value Work: 0.209
Space Group: P 6₄

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 200.327	α = 90
b = 200.327	β = 90
c = 52.06	γ = 120

Software Package:

Software Name	Purpose
DENZO	data reduction
BUSTER-TNT	refinement
PDB_EXTRACT	data extraction
HKL-2000	data reduction
HKL-2000	data scaling
PHASER	phasing
BUSTER	refinement

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Deposited Date: 2010-09-07
Released Date: 2010-09-15

Deposition Author(s):

Arrowsmith, C.H.

Plotnikov, A.N.

Structural Genomics Consortium (SGC)

This entry supersedes: 1ZX0

Revision History (Full details and data files)

Version 1.0: 2010-09-15
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance

RCSB PDB is funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.