3CU7

Human Complement Component 5


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.10 Å
  • R-Value Free: 0.281 
  • R-Value Work: 0.236 
  • R-Value Observed: 0.238 

wwPDB Validation   3D Report Full Report



Literature

Structure of and influence of a tick complement inhibitor on human complement component 5

Fredslund, F.Laursen, N.S.Roversi, P.Jenner, L.Oliveira, C.L.P.Pedersen, J.S.Nunn, M.A.Lea, S.M.Discipio, R.Sottrup-Jensen, L.Andersen, G.R.

(2008) Nat Immunol 9: 753-760

  • DOI: 10.1038/ni.1625
  • Primary Citation of Related Structures:  
    3CU7

  • PubMed Abstract: 
  • To provide insight into the structural and functional properties of human complement component 5 (C5), we determined its crystal structure at a resolution of 3.1 A. The core of C5 adopted a structure resembling that of C3, with the domain arrangement at ...

    To provide insight into the structural and functional properties of human complement component 5 (C5), we determined its crystal structure at a resolution of 3.1 A. The core of C5 adopted a structure resembling that of C3, with the domain arrangement at the position corresponding to the C3 thioester being very well conserved. However, in contrast to C3, the convertase cleavage site in C5 was ordered and the C345C domain flexibly attached to the core of C5. Binding of the tick C5 inhibitor OmCI to C5 resulted in stabilization of the global conformation of C5 but did not block the convertase cleavage site. The structure of C5 may render possible a structure-based approach for the design of new selective complement inhibitors.


    Organizational Affiliation

    Department of Molecular Biology, University of Aarhus, DK-8000 Aarhus, Denmark.



Macromolecules
Find similar proteins by:  (by identity cutoff)  |  Structure
Entity ID: 1
MoleculeChainsSequence LengthOrganismDetailsImage
Complement C5 AB1676Homo sapiensMutation(s): 0 
Gene Names: C5CPAMD4
Find proteins for P01031 (Homo sapiens)
Explore P01031 
Go to UniProtKB:  P01031
NIH Common Fund Data Resources
PHAROS:  P01031
Protein Feature View
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  • Reference Sequence
Oligosaccharides

Help

Entity ID: 2
MoleculeChainsChain Length2D Diagram Glycosylation3D Interactions
2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
C, D
2 N-Glycosylation Oligosaccharides Interaction
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.10 Å
  • R-Value Free: 0.281 
  • R-Value Work: 0.236 
  • R-Value Observed: 0.238 
  • Space Group: P 31
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 144.26α = 90
b = 144.26β = 90
c = 241γ = 120
Software Package:
Software NamePurpose
PHENIXrefinement
MAR345data collection
XDSdata reduction
XSCALEdata scaling
PHASERphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History 

  • Version 1.0: 2008-06-10
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Non-polymer description, Version format compliance
  • Version 1.2: 2013-11-06
    Changes: Data collection
  • Version 1.3: 2017-10-25
    Changes: Data collection, Refinement description
  • Version 2.0: 2020-07-29
    Type: Remediation
    Reason: Carbohydrate remediation
    Changes: Atomic model, Data collection, Derived calculations, Structure summary