Download MendeleyCrystal Structure of P14 Alanine Variant of Antithrombin
To be published.
2HIJ
Crystal Structure of P14 Alanine Variant of Antithrombin
- DOI: 10.2210/pdb2HIJ/pdb
- Classification: BLOOD CLOTTING/ HYDROLASE INHIBITOR
- Organism(s): Homo sapiens
- Expression System: Drosophila melanogaster
- Mutation(s): Yes
- Deposited: 2006-06-29 Released: 2007-06-19
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.90 Å
- R-Value Free: 0.249
- R-Value Work: 0.199
- R-Value Observed: 0.199
wwPDB Validation 3D Report Full Report
Literature
To be published.
Macromolecules
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(by identity cutoff) | Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Antithrombin-III | I | 432 | Homo sapiens | Mutation(s): 2 Gene Names: SERPINC1, AT3, PRO0309 |  |
Find proteins for P01008 (Homo sapiens) Explore P01008 Go to UniProtKB: P01008 | |||||
NIH Common Fund Data Resources | |||||
Protein Feature ViewExpand | |||||
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(by identity cutoff) | Structure
Oligosaccharides
Entity ID: 3 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Chain Length | 2D Diagram | Glycosylation | 3D Interactions |
| alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | A | 3 |  | N-Glycosylation | Oligosaccharides Interaction |
Entity ID: 4 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Chain Length | 2D Diagram | Glycosylation | 3D Interactions |
| 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | B | 2 |  | N-Glycosylation | Oligosaccharides Interaction |
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| NAG Query on NAG | I, L | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N |  | Ligand Interaction | |
| GOL Query on GOL | I, L | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.90 Å
- R-Value Free: 0.249
- R-Value Work: 0.199
- R-Value Observed: 0.199
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 61.743 | α = 90 |
| b = 98.627 | β = 101.4 |
| c = 87.569 | γ = 90 |
| Software Name | Purpose |
|---|---|
| CNS | refinement |
| PDB_EXTRACT | data extraction |
| CNS | phasing |
Entry History
Deposition Data
- Deposited Date: 2006-06-29
- Released Date: 2007-06-19 Deposition Author(s): Luis, S.A., Bock, S.C., Huntington, J.A.
Revision History
- Version 1.0: 2007-06-19
Type: Initial release - Version 1.1: 2008-05-01
Changes: Version format compliance - Version 1.2: 2011-07-13
Changes: Non-polymer description, Version format compliance - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Atomic model, Data collection, Derived calculations, Structure summary
