1BN9

RESPONSE ELEMENT OF THE ORPHAN NUCLEAR RECEPTOR REV-ERB BETA

• PDB DOI: https://doi.org/10.2210/pdb1BN9/pdb
• NAKB: 1BN9
• BMRB: 4172

• Classification: DNA
• Mutation(s): No 


• Deposited: 1998-07-31 Released: 1998-08-05 
• Deposition Author(s): Castagne, C., Terenzi, H., Zakin, M.M., Delepierre, M.

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 1 
• Conformers Submitted: 1 

Literature

Solution structure of the orphan nuclear receptor rev-erb beta response element by 1H, 31P NMR and molecular simulation

Castagne, C., Terenzi, H., Zakin, M.M., Delepierre, M.

(2000) Biochimie 82: 739-748

• PubMed: 11018291 
• DOI: https://doi.org/10.1016/s0300-9084(00)01148-2
• Primary Citation of Related Structures:  
  1BN9


• PubMed Abstract: 
  

  Rev-erb beta is an orphan receptor that binds as a homodimer or as a monomer to DNA. The solution structure of the non-palindromic 15 bp DNA duplex d(TAGAATGTAGGTCAG), the response element of Rev-erb beta for monomeric binding, was determined by 1H and 31P NMR, energy minimization with NMR-derived restraints for distances and NOE back-calculation methods. The refined final structures have the typical overall features of B-type DNA. However, titration of this 15 bp duplex with ReDBD, the DNA binding domain of Rev-erb beta, showed large shifts of imino protons and 31P signals, suggesting major conformational changes.

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Organizational Affiliation: 

Laboratoire de Résonance Magnétique Nucléaire, CNRS URA 1773, Institut Pasteur, 28, rue du Dr.-Roux, 75724 cedex 15, Paris, France.

Biological Assembly 1  

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 9.18 kDa 
• Atom Count: 607 
• Modelled Residue Count: 30 
• Deposited Residue Count: 30 
• Unique nucleic acid chains: 2

Macromolecules

Entity ID: 1
Molecule	Chains	Length	Organism	Image
DNA (5'-D(*TP*AP*GP*AP*AP*TP*GP*TP*AP*GP*GP*TP*CP*AP*G)-3')	A	15	N/A

Entity ID: 2
Molecule	Chains	Length	Organism	Image
DNA (5'-D(*CP*TP*GP*AP*CP*CP*TP*AP*CP*AP*TP*TP*CP*TP*A)-3')	B	15	N/A

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 1 
• Conformers Submitted: 1 

Structure Validation

Currently 1BN9 does not have a validation slider image.

Entry History 

Deposition Data

• Released Date: 1998-08-05 
Deposition Author(s): Castagne, C., Terenzi, H., Zakin, M.M., Delepierre, M.

Revision History  

• Version 1.0: 1998-08-05
  Type: Initial release
  
• Version 1.1: 2008-04-27
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2022-02-16
  Changes: Database references, Derived calculations
• Version 1.4: 2023-12-27
  Changes: Data collection