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The RCSB PDB builds upon the data by creating tools and resources for research and education in molecular biology, structural biology, computational biology, and beyond.
Use this website to access curated and integrated biological macromolecular information in the context of function, biological processes, evolution, pathways, and disease states.
View PDB structures in 3D using one of these tools from any entry's Structure Summary page: NGL, PV, Jmol, and Protein Workshop.
These viewers offer several different options for display and analysis.
PDB ID: 4HHB
RCSB PDB's Comparison Tool calculates pairwise sequence (blast2seq, Needleman-Wunsch, and Smith-Waterman) and structure alignments (FATCAT, CE, Mammoth, TM-Align, TopMatch).
Comparisons can be made for any protein in the PDB archive and for customized or local files not in the PDB.
Special features include support for both rigid-body and flexible alignments and detection of circular permutations.
Enter PDB IDs separated by comma or white space. Note: The Download Tool is launched as a stand-alone application using the Java Web Start protocol. More Download Help
PDB-101 is an online portal for teachers, students, and the general public to promote exploration in the world of proteins and nucleic acids.
Presents short accounts on selected molecules from the Protein Data Bank.
Upcoming meetings and events RCSB will hold
Access materials that promote exploration in the world of proteins and nucleic acids.
Understanding PDB Data is a reference to help explore and interpret individual PDB entries.
Authentic, hands-on teaching materials, individual and group activities.
View iconic illustrations by the gifted artist Irving Geis (1908-1997) in context with PDB structures and educational information.
The PDB archive is updated weekly in two phases
Phase I: Every Saturday by 3:00 UTC, for every new entry, wwPDB website provides sequence(s) (amino acid or nucleotide) for each distinct polymer and, where appropriate, the InChI string(s) for each distinct ligand and the crystallization pH value(s).
Phase II: Every Wednesday by 00:00 UTC, all new and modified data entries will be updated at each of the wwPDB FTP sites.
Tuesday Oct 18, 2016 at 5 PM PDT
Next data entry update in:
Visualizing structure quality metrics in three dimensions » 10/11
Analyze small molecule interactions with NGL » 10/11
Access mulitple high resolution images that highlight orientation in membranes » 10/11
Summary pages highlight data from the Biologically Interesting molecule Reference Dictionary and Chemical Component Dictionary » 10/11
Links to Store.Synchrotron have been added » 10/11
Tour the Geis Digital Archive in celebration of Irving Geis’ birthday (October 18). Developed in collaboration with HHMI, the archive hosts iconic images of DNA, hemoglobin, and other important macromolecules. » 10/18
The Structural Biology Knowledgebase (SBKB) is a free resource supported by the Protein Structure Initiative that
gathers the latest protein structures, models, targets, and annotations from over 100 data sources. Research highlights
by SBKB and the Nature Publishing Group provide insights into biology and medicine, spanning from basic molecular
biology to infectious diseases and pathogenesis to drug discovery. Reviews of novel bench methods as well as improvements
to tried-and-tested techniques also help researchers with their lab work. There are more than 450 articles to learn
from in this collection.Read More
Inhibitors of dipeptidyl peptidase 4 are used to treat type-2 diabetesRead More
Learn about new website resources and access the new wwPDB Validation Server. In the Education Corner, Todd P. Silverstein (Willamette University) describes Myoglobin Structure and Function: A multi-week biochemistry laboratory project for undergraduates. Fall 2016 Newsletter
Download the 2015 Annual Report (PDF) for an overview of data deposition, query, outreach, and education activities.
Annual Report Archive
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US Department of Energy.