8YE5

Structural and functional research of Reductive Dehalogenases TmrC using a cell-free expression system for heterologous expression

PDB DOI: https://doi.org/10.2210/pdb8YE5/pdb

Classification: GENE REGULATION
Organism(s): Dehalobacter sp.
Expression System: Cell-free gateway cloning vector N-term 8xHis mcherry pCellFree_G05
Mutation(s): No

Deposited: 2024-02-21 Released: 2024-03-06
Deposition Author(s): Zhang, X.Y., Liu, Y.Q.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.49 Å
R-Value Free: 0.213
R-Value Work: 0.184
R-Value Observed: 0.185

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Structural and functional research of Reductive Dehalogenases TmrC using a cell-free expression system for heterologous expression

Zhang, X.Y., Liu, Y.Q.

To be published.

Macromolecule Content

Total Structure Weight: 29.1 kDa
Atom Count: 2,189
Modelled Residue Count: 244
Deposited Residue Count: 258
Unique protein chains: 1

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
TmrC	A, B	129	Dehalobacter sp.	Mutation(s): 0
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.49 Å
R-Value Free: 0.213
R-Value Work: 0.184
R-Value Observed: 0.185
Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 59.202	α = 90
b = 31.59	β = 109.88
c = 65.651	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
XDS	data scaling
PHENIX	phasing

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2024-03-06

Deposition Author(s):

Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	42377012

Revision History (Full details and data files)

Version 1.0: 2024-03-06
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.