8VZN

Cryo-EM structure of FLVCR2 in the inward-facing state with choline bound


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.77 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Structural and molecular basis of choline uptake into the brain by FLVCR2.

Cater, R.J.Mukherjee, D.Gil-Iturbe, E.Erramilli, S.K.Chen, T.Koo, K.Santander, N.Reckers, A.Kloss, B.Gawda, T.Choy, B.C.Zhang, Z.Katewa, A.Larpthaveesarp, A.Huang, E.J.Mooney, S.W.J.Clarke, O.B.Yee, S.W.Giacomini, K.M.Kossiakoff, A.A.Quick, M.Arnold, T.Mancia, F.

(2024) Nature 629: 704-709

  • DOI: https://doi.org/10.1038/s41586-024-07326-y
  • Primary Citation of Related Structures:  
    8VZN, 8VZO

  • PubMed Abstract: 

    Choline is an essential nutrient that the human body needs in vast quantities for cell membrane synthesis, epigenetic modification and neurotransmission. The brain has a particularly high demand for choline, but how it enters the brain remains unknown 1-3 . The major facilitator superfamily transporter FLVCR1 (also known as MFSD7B or SLC49A1) was recently determined to be a choline transporter but is not highly expressed at the blood-brain barrier, whereas the related protein FLVCR2 (also known as MFSD7C or SLC49A2) is expressed in endothelial cells at the blood-brain barrier 4-7 . Previous studies have shown that mutations in human Flvcr2 cause cerebral vascular abnormalities, hydrocephalus and embryonic lethality, but the physiological role of FLVCR2 is unknown 4,5 . Here we demonstrate both in vivo and in vitro that FLVCR2 is a BBB choline transporter and is responsible for the majority of choline uptake into the brain. We also determine the structures of choline-bound FLVCR2 in both inward-facing and outward-facing states using cryo-electron microscopy. These results reveal how the brain obtains choline and provide molecular-level insights into how FLVCR2 binds choline in an aromatic cage and mediates its uptake. Our work could provide a novel framework for the targeted delivery of therapeutic agents into the brain.


  • Organizational Affiliation

    Department of Physiology and Cellular Biophysics, Columbia University, New York, NY, USA. r.cater@uq.edu.au.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Feline leukemia virus subgroup C cellular receptor 2551Mus musculusMutation(s): 0 
Gene Names: Flvcr2Mfsd7c
UniProt & NIH Common Fund Data Resources
Find proteins for A0A0R4J0E9 (Mus musculus)
Explore A0A0R4J0E9 
Go to UniProtKB:  A0A0R4J0E9
IMPC:  MGI:2384974
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A0R4J0E9
Sequence Annotations
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Fab FLV9 heavy chain239synthetic constructMutation(s): 0 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Fab FLV9 light chain215synthetic constructMutation(s): 0 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations
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  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
CHT (Subject of Investigation/LOI)
Query on CHT

Download Ideal Coordinates CCD File 
D [auth A]CHOLINE ION
C5 H14 N O
OEYIOHPDSNJKLS-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.77 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX1.16_3549:

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of Neurological Disorders and Stroke (NIH/NINDS)United StatesNS129105-01
National Institutes of Health/National Heart, Lung, and Blood Institute (NIH/NHLBI)United StatesHL166866-01

Revision History  (Full details and data files)

  • Version 1.0: 2024-05-01
    Type: Initial release
  • Version 1.1: 2024-05-15
    Changes: Database references
  • Version 1.2: 2024-05-22
    Changes: Database references