8VXQ

Cryo-EM structure of phage DEV ejection proteins gp72:gp73


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.10 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Integrative structural analysis of Pseudomonas phage DEV reveals a genome ejection motor.

Cingolani, G.Lokareddy, R.Hou, C.F.Forti, F.Iglesias, S.Li, F.Pavlenok, M.Niederweis, M.Briani, F.

(2024) Res Sq 

  • DOI: https://doi.org/10.21203/rs.3.rs-3941185/v1
  • Primary Citation of Related Structures:  
    8VXQ

  • PubMed Abstract: 

    DEV is an obligatory lytic Pseudomonas phage of the N4-like genus, recently reclassified as Schitoviridae . The DEV genome encodes 91 ORFs, including a 3,398 amino acid virion-associated RNA polymerase. Here, we describe the complete architecture of DEV, determined using a combination of cryo-electron microscopy localized reconstruction, biochemical methods, and genetic knockouts. We built de novo structures of all capsid factors and tail components involved in host attachment. We demonstrate that DEV long tail fibers are essential for infection of Pseudomonas aeruginosa and dispensable for infecting mutants with a truncated lipopolysaccharide devoid of the O-antigen. We identified DEV ejection proteins and, unexpectedly, found that the giant DEV RNA polymerase, the hallmark of the Schitoviridae family, is an ejection protein. We propose that DEV ejection proteins form a genome ejection motor across the host cell envelope and that these structural principles are conserved in all Schitoviridae .


  • Organizational Affiliation

    University of Alabama at Birmingham.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
gp72521Pseudomonas phage vB_PaeP_DEVMutation(s): 0 
UniProt
Find proteins for A0A2K8HKQ8 (Pseudomonas phage vB_PaeP_DEV)
Explore A0A2K8HKQ8 
Go to UniProtKB:  A0A2K8HKQ8
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A2K8HKQ8
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
N4 gp52-like protein155Pseudomonas phage vB_PaeP_DEVMutation(s): 0 
UniProt
Find proteins for A0A2K8I0A4 (Pseudomonas phage vB_PaeP_DEV)
Explore A0A2K8I0A4 
Go to UniProtKB:  A0A2K8I0A4
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A2K8I0A4
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.10 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Cancer Institute (NIH/NCI)United StatesGM140733

Revision History  (Full details and data files)

  • Version 1.0: 2024-04-03
    Type: Initial release