8VIS

Human TMPRSS11D complexed with a disulfide-linked autoinhibitory DDDDK peptide

• PDB DOI: https://doi.org/10.2210/pdb8VIS/pdb

• Classification: HYDROLASE
• Organism(s): Homo sapiens
• Expression System: Spodoptera frugiperda
• Mutation(s): Yes 


• Deposited: 2024-01-05 Released: 2024-01-31 
• Deposition Author(s): Fraser, B.J., Dong, A., Ilyassov, O., Kenney, T., Li, Y.Y., Seitova, A., Li, Y., Hejazi, Z., Edwards, A., Benard, F., Arrowsmith, C.
• Funding Organization(s): Canadian Institutes of Health Research (CIHR), National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.59 Å
• R-Value Free: 0.187 
• R-Value Work: 0.155 
• R-Value Observed: 0.155 

Literature

Human TMPRSS11D complexed with a disulfide-linked autoinhibitory DDDDK peptide

Fraser, B.J., Dong, A., Ilyassov, O., Kenney, T., Li, Y.Y., Seitova, A., Li, Y., Hejazi, Z., Edwards, A., Benard, F., Arrowsmith, C.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 2-mer - A1B1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 2-mer - A1B1 

Biological assembly 2 assigned by authors and generated by PISA (software)

Biological Assembly 3  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 2-mer - A1B1 

Biological assembly 3 assigned by authors and generated by PISA (software)

Biological Assembly 4  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 2-mer - A1B1 

Biological assembly 4 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 173.48 kDa 
• Atom Count: 9,337 
• Modelled Residue Count: 1,015 
• Deposited Residue Count: 1,556 
• Unique protein chains: 2

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Transmembrane protease serine 11D non-catalytic chain	A, C, E, G	145	Homo sapiens	Mutation(s): 5  Gene Names: TMPRSS11D, HAT
UniProt & NIH Common Fund Data Resources
Find proteins for O60235 (Homo sapiens) Explore O60235  Go to UniProtKB:  O60235
PHAROS:  O60235 GTEx:  ENSG00000153802

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Transmembrane protease serine 11D catalytic chain	B, D, F, H	244	Homo sapiens	Mutation(s): 0  Gene Names: TMPRSS11D, HAT
UniProt & NIH Common Fund Data Resources
Find proteins for O60235 (Homo sapiens) Explore O60235  Go to UniProtKB:  O60235
PHAROS:  O60235 GTEx:  ENSG00000153802

Small Molecules

Ligands 4 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
GOL	J [auth B], L [auth D]	GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N
EDO	K [auth B], S [auth H]	1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N
MG	I [auth A], O [auth E], Q [auth H]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N
UNX	M [auth D], N [auth D], P [auth F], R [auth H], T [auth H]	UNKNOWN ATOM OR ION X

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.59 Å
• R-Value Free: 0.187 
• R-Value Work: 0.155 
• R-Value Observed: 0.155 
• Space Group: P 4₃ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 119.676	α = 90
b = 119.676	β = 90
c = 134.289	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
HKL-3000	data scaling
HKL-3000	data reduction
PHASER	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-01-31 
Deposition Author(s): Fraser, B.J., Dong, A., Ilyassov, O., Kenney, T., Li, Y.Y., Seitova, A., Li, Y., Hejazi, Z., Edwards, A., Benard, F., Arrowsmith, C.

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Funding Organization	Location	Grant Number
Canadian Institutes of Health Research (CIHR)	Canada	FDN154328
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)	United States	P30 GM124165

Revision History  

• Version 1.0: 2024-01-31
  Type: Initial release