8USP

Structural and biochemical investigations of a HEAT-repeat protein involved in the cytosolic iron-sulfur cluster assembly pathway


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.30 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Structural and biochemical investigations of a HEAT-repeat protein involved in the cytosolic iron-sulfur cluster assembly pathway.

Vasquez, S.Marquez, M.D.Brignole, E.J.Vo, A.Kong, S.Park, C.Perlstein, D.L.Drennan, C.L.

(2023) Commun Biol 6: 1276-1276

  • DOI: https://doi.org/10.1038/s42003-023-05579-3
  • Primary Citation of Related Structures:  
    8USP, 8USQ

  • PubMed Abstract: 

    Iron-sulfur clusters are essential for life and defects in their biosynthesis lead to human diseases. The mechanism of cluster assembly and delivery to cytosolic and nuclear client proteins via the cytosolic iron-sulfur cluster assembly (CIA) pathway is not well understood. Here we report cryo-EM structures of the HEAT-repeat protein Met18 from Saccharomyces cerevisiae, a key component of the CIA targeting complex (CTC) that identifies cytosolic and nuclear client proteins and delivers a mature iron-sulfur cluster. We find that in the absence of other CTC proteins, Met18 adopts tetrameric and hexameric states. Using mass photometry and negative stain EM, we show that upon the addition of Cia2, these higher order oligomeric states of Met18 disassemble. We also use pulldown assays to identify residues of critical importance for Cia2 binding and recognition of the Leu1 client, many of which are buried when Met18 oligomerizes. Our structures show conformations of Met18 that have not been previously observed in any Met18 homolog, lending support to the idea that a highly flexible Met18 may be key to how the CTC is able to deliver iron-sulfur clusters to client proteins of various sizes and shapes, i.e. Met18 conforms to the dimensions needed.


  • Organizational Affiliation

    Department of Biology, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
DNA repair/transcription protein MET18/MMS19
A, B, C, D, E
A, B, C, D, E, F
1,032Saccharomyces cerevisiae S288CMutation(s): 0 
Gene Names: MET18
UniProt
Find proteins for P40469 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P40469 
Go to UniProtKB:  P40469
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP40469
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.30 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONRELION3.0
RECONSTRUCTIONWarp

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesGM126982
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United StatesGM121673
National Science Foundation (NSF, United States)United StatesDGE-1247312
National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS)United States5T32GM007287

Revision History  (Full details and data files)

  • Version 1.0: 2023-12-27
    Type: Initial release
  • Version 1.1: 2024-01-10
    Changes: Source and taxonomy
  • Version 1.2: 2024-05-01
    Changes: Database references