8T9X

Zophobas morio black wasting virus strain NJ2-molitor virion structure

• PDB DOI: https://doi.org/10.2210/pdb8T9X/pdb
• EM Map EMD-41125: EMDB EMDataResource
• NAKB: 8T9X

• Classification: VIRUS/DNA
• Organism(s): Zophobas morio black wasting virus
• Mutation(s): No 


• Deposited: 2023-06-26 Released: 2024-02-21 
• Deposition Author(s): Penzes, J.J., Kaelber, J.T.
• Funding Organization(s): Other government, Other private

---

Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 2.00 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Literature

Sequencing-free discovery by cryo-EM of a pathogenic parvovirus causing mass mortality of farmed beetles

Penzes, J.J., Holm, M., Firlar, E., Kaelber, J.T.

To be published.

Biological Assembly 1  

Global Symmetry: Icosahedral - I  (Explore in 3D)
Global Stoichiometry: Homo 60-mer - A60 

Biological assembly 1 assigned by authors and generated by (software)

Biological Assembly Evidence: electron microscopy

Macromolecule Content

• Total Structure Weight: 53.21 kDa 
• Atom Count: 3,819 
• Modelled Residue Count: 446 
• Deposited Residue Count: 446 
• Unique protein chains: 1
• Unique nucleic acid chains: 3

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Major capsid protein	A	429	Zophobas morio black wasting virus	Mutation(s): 0
UniProt
Find proteins for A0AA49QGS8 (Zophobas morio black wasting virus) Explore A0AA49QGS8  Go to UniProtKB:  A0AA49QGS8

Entity ID: 2
Molecule	Chains	Length	Organism	Image
DNA (5'-D(P*CP*GP*A)-3')	B	3	Zophobas morio black wasting virus

Entity ID: 3
Molecule	Chains	Length	Organism	Image
DNA (5'-D(P*CP*AP*GP*GP*CP*CP*AP*AP*A)-3')	C	9	Zophobas morio black wasting virus

Entity ID: 4
Molecule	Chains	Length	Organism	Image
DNA (5'-D(P*TP*CP*GP*AP*A)-3')	D	5	Zophobas morio black wasting virus

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 2.00 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

EM Software:

Task	Software Package	Version
RECONSTRUCTION	cryoSPARC

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-02-21 
Deposition Author(s): Penzes, J.J., Kaelber, J.T.

---

Funding Organization	Location	Grant Number
Other government	United States	--
Other private	United States	--

Revision History  

• Version 1.0: 2024-02-21
  Type: Initial release
  
• Version 1.1: 2024-05-08
  Changes: Source and taxonomy