8SMR

cytochrome bc1-cbb3 supercomplex from Pseudomonas aeruginosa


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.70 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


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Literature

Structure of the bc 1 - cbb 3 respiratory supercomplex from Pseudomonas aeruginosa.

Di Trani, J.M.Gheorghita, A.A.Turner, M.Brzezinski, P.Adelroth, P.Vahidi, S.Howell, P.L.Rubinstein, J.L.

(2023) Proc Natl Acad Sci U S A 120: e2307093120-e2307093120

  • DOI: https://doi.org/10.1073/pnas.2307093120
  • Primary Citation of Related Structures:  
    8SMR, 8SNH

  • PubMed Abstract: 

    Energy conversion by electron transport chains occurs through the sequential transfer of electrons between protein complexes and intermediate electron carriers, creating the proton motive force that enables ATP synthesis and membrane transport. These protein complexes can also form higher order assemblies known as respiratory supercomplexes (SCs). The electron transport chain of the opportunistic pathogen Pseudomonas aeruginosa is closely linked with its ability to invade host tissue, tolerate harsh conditions, and resist antibiotics but is poorly characterized. Here, we determine the structure of a P. aeruginosa SC that forms between the quinol:cytochrome c oxidoreductase (cytochrome bc 1 ) and one of the organism's terminal oxidases, cytochrome cbb 3 , which is found only in some bacteria. Remarkably, the SC structure also includes two intermediate electron carriers: a diheme cytochrome c 4 and a single heme cytochrome c 5 . Together, these proteins allow electron transfer from ubiquinol in cytochrome bc 1 to oxygen in cytochrome cbb 3 . We also present evidence that different isoforms of cytochrome cbb 3 can participate in formation of this SC without changing the overall SC architecture. Incorporating these different subunit isoforms into the SC would allow the bacterium to adapt to different environmental conditions. Bioinformatic analysis focusing on structural motifs in the SC suggests that cytochrome bc 1 - cbb 3 SCs also exist in other bacterial pathogens.


  • Organizational Affiliation

    Molecular Medicine program, The Hospital for Sick Children, Toronto, ON M5G 0A4, Canada.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Ubiquinol-cytochrome c reductase iron-sulfur subunitA [auth C],
F [auth Z]
194Pseudomonas aeruginosaMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for Q9HVY4 (Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1))
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Go to UniProtKB:  Q9HVY4
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UniProt GroupQ9HVY4
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Cytochrome bB [auth I],
G [auth D]
403Pseudomonas aeruginosaMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for Q9HVY5 (Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1))
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Go to UniProtKB:  Q9HVY5
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Cytochrome c1C [auth J],
H [auth M]
233Pseudomonas aeruginosaMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for Q9HVY6 (Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1))
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Cytochrome c4D [auth K],
I [auth N]
181Pseudomonas aeruginosaMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for P00106 (Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1))
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Cytochrome C5E [auth L],
J [auth O]
136Pseudomonas aeruginosaMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for Q9HTQ4 (Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1))
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
cytochrome-c oxidaseK [auth E]468Pseudomonas aeruginosaMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for Q9HWP8 (Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1))
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Entity ID: 7
MoleculeChains Sequence LengthOrganismDetailsImage
Cbb3-type Cytochrome C oxidase subunit IIL [auth F]200Pseudomonas aeruginosaMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for Q9I3G4 (Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1))
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Entity ID: 8
MoleculeChains Sequence LengthOrganismDetailsImage
Cbb3-type cytochrome c oxidase subunitM [auth G]312Pseudomonas aeruginosaMutation(s): 0 
Membrane Entity: Yes 
UniProt
Find proteins for Q9I3G5 (Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1))
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Small Molecules
Ligands 7 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
U10
Query on U10

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Q [auth I],
Z [auth D]
UBIQUINONE-10
C59 H90 O4
ACTIUHUUMQJHFO-UPTCCGCDSA-N
I7Y
Query on I7Y

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R [auth I],
W [auth Z]
(2R)-2-(methoxymethyl)-4-{[(25R)-spirost-5-en-3beta-yl]oxy}butyl 4-O-alpha-D-glucopyranosyl-beta-D-glucopyranoside
C45 H74 O15
MUCLRRLHERFRKG-ZHIGRBBGSA-N
HEC
Query on HEC

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AA [auth M]
BA [auth N]
CA [auth N]
IA [auth F]
JA [auth G]
AA [auth M],
BA [auth N],
CA [auth N],
IA [auth F],
JA [auth G],
KA [auth G],
S [auth J],
T [auth K],
U [auth K]
HEME C
C34 H34 Fe N4 O4
HXQIYSLZKNYNMH-LJNAALQVSA-N
HEM
Query on HEM

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GA [auth E]
HA [auth E]
O [auth I]
P [auth I]
X [auth D]
GA [auth E],
HA [auth E],
O [auth I],
P [auth I],
X [auth D],
Y [auth D]
PROTOPORPHYRIN IX CONTAINING FE
C34 H32 Fe N4 O4
KABFMIBPWCXCRK-RGGAHWMASA-L
FES
Query on FES

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N [auth C],
V [auth Z]
FE2/S2 (INORGANIC) CLUSTER
Fe2 S2
NIXDOXVAJZFRNF-UHFFFAOYSA-N
CU
Query on CU

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DA [auth E]COPPER (II) ION
Cu
JPVYNHNXODAKFH-UHFFFAOYSA-N
CA
Query on CA

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EA [auth E],
FA [auth E]
CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.70 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Canadian Institutes of Health Research (CIHR)CanadaPJT162186
Canadian Institutes of Health Research (CIHR)CanadaPJT451412

Revision History  (Full details and data files)

  • Version 1.0: 2023-10-11
    Type: Initial release