8QK8

Structure of Legionella pneumophila Lcl C-terminal domain bound to sulphate


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.90 Å
  • R-Value Free: 0.187 
  • R-Value Work: 0.160 

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Ligand Structure Quality Assessment 


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Literature

The Legionella collagen-like protein employs a unique binding mechanism for the recognition of host glycosaminoglycans.

Rehman, S.Antonovic, A.K.McIntire, I.E.Zheng, H.Cleaver, L.Adams, C.O.Portlock, T.Richardson, K.Shaw, R.Oregioni, A.Mastroianni, G.Whittaker, S.B.Kelly, G.Fornili, A.Cianciotto, N.P.Garnett, J.A.

(2023) Biorxiv 

  • DOI: https://doi.org/10.1101/2023.12.10.570962
  • Primary Citation of Related Structures:  
    8Q4E, 8QK8

  • PubMed Abstract: 

    Bacterial adhesion is a fundamental process which enables colonisation of niche environments and is key for infection. However, in Legionella pneumophila , the causative agent of Legionnaires' disease, these processes are not well understood. The Legionella collagen-like protein (Lcl) is an extracellular peripheral membrane protein that recognises sulphated glycosaminoglycans (GAGs) on the surface of eukaryotic cells, but also stimulates bacterial aggregation in response to divalent cations. Here we report the crystal structure of the Lcl C-terminal domain (Lcl-CTD) and present a model for intact Lcl. Our data reveal that Lcl-CTD forms an unusual dynamic trimer arrangement with a positively charged external surface and a negatively charged solvent exposed internal cavity. Through Molecular Dynamics (MD) simulations, we show how the GAG chondroitin-4-sulphate associates with the Lcl-CTD surface via unique binding modes. Our findings show that Lcl homologs are present across both the Pseudomonadota and Fibrobacterota-Chlorobiota-Bacteroidota phyla and suggest that Lcl may represent a versatile carbohydrate binding mechanism.


  • Organizational Affiliation

    Centre for Host-Microbiome Interactions, Faculty of Dental, Oral & Craniofacial Sciences, King's College London, London, UK.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
HbP1
A, B
165Legionella pneumophila 130bMutation(s): 0 
Gene Names: hbP1
UniProt
Find proteins for E7BLH6 (Legionella pneumophila)
Explore E7BLH6 
Go to UniProtKB:  E7BLH6
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupE7BLH6
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.90 Å
  • R-Value Free: 0.187 
  • R-Value Work: 0.160 
  • Space Group: P 3 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 74.91α = 90
b = 74.91β = 90
c = 94.97γ = 120
Software Package:
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
PHASERphasing

Structure Validation

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Ligand Structure Quality Assessment 


Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Medical Research Council (MRC, United Kingdom)United KingdomMR/M009920/1
Medical Research Council (MRC, United Kingdom)United KingdomMR/R017662/1

Revision History  (Full details and data files)

  • Version 1.0: 2023-12-27
    Type: Initial release