8OSI

Genetically encoded green ratiometric calcium indicator FNCaMP in calcium-bound state


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.42 Å
  • R-Value Free: 0.231 
  • R-Value Work: 0.196 
  • R-Value Observed: 0.198 

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Literature

FNCaMP, ratiometric green calcium indicator based on mNeonGreen protein.

Subach, O.M.Varfolomeeva, L.Vlaskina, A.V.Agapova, Y.K.Nikolaeva, A.Y.Piatkevich, K.D.Patrushev, M.V.Boyko, K.M.Subach, F.V.

(2023) Biochem Biophys Res Commun 665: 169-177

  • DOI: https://doi.org/10.1016/j.bbrc.2023.04.108
  • Primary Citation of Related Structures:  
    8OSI

  • PubMed Abstract: 

    Neurobiologists widely use green genetically encoded calcium indicators (GECIs) for visualization of neuronal activity. Among them, ratiometric GECIs allow imaging of both active and non-active neuronal populations. However, they are not popular, since their properties are inferior to intensiometric GCaMP series of GECIs. The most characterized and developed ratiometric green GECI is FGCaMP7. However, the dynamic range and sensitivity of its large Stock's shift green (LSS-Green) form is significantly lower than its Green form and its molecular design is not optimal. To address these drawbacks, we engineered a ratiometric green calcium indicator, called FNCaMP, which is based on bright mNeonGreen protein and calmodulin from A. niger and has optimal NTnC-like design. We compared the properties of the FNCaMP and FGCaMP7 indicators in vitro, in mammalian cells, and in neuronal cultures. Finally, we obtained and analyzed X-ray structure of the FNCaMP indicator.


  • Organizational Affiliation

    Complex of NBICS Technologies, National Research Center "Kurchatov Institute", Moscow, 123182, Russia. Electronic address: subach_om@nrcki.ru.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
mNeonGreen,Calmodulin,Protein kinase domain-containing protein463Branchiostoma lanceolatumAspergillus nigerMutation(s): 38 
Gene Names: blFP-Y3ABL_02521ATCC64974_81790CAN33_002760ATCC64974_70630CAN33_0054440
UniProt
Find proteins for A0A254U4M1 (Aspergillus niger)
Explore A0A254U4M1 
Go to UniProtKB:  A0A254U4M1
Find proteins for A0A1S4NYF2 (Branchiostoma lanceolatum)
Explore A0A1S4NYF2 
Go to UniProtKB:  A0A1S4NYF2
Find proteins for A0A100IBH9 (Aspergillus niger)
Explore A0A100IBH9 
Go to UniProtKB:  A0A100IBH9
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupsA0A1S4NYF2A0A100IBH9A0A254U4M1
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.42 Å
  • R-Value Free: 0.231 
  • R-Value Work: 0.196 
  • R-Value Observed: 0.198 
  • Space Group: P 32 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 151.4α = 90
b = 151.4β = 90
c = 61.969γ = 120
Software Package:
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
MOLREPphasing

Structure Validation

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Ligand Structure Quality Assessment 


Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Russian Science FoundationRussian Federation21-74-20135

Revision History  (Full details and data files)

  • Version 1.0: 2023-05-24
    Type: Initial release