8IPW

The sturecture of Legionella effector protein MavL with ADPR

• PDB DOI: https://doi.org/10.2210/pdb8IPW/pdb

• Classification: PROTEIN BINDING
• Organism(s): Legionella pneumophila
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2023-03-15 Released: 2024-03-20 
• Deposition Author(s): Ouyang, S., Hongxin, G.
• Funding Organization(s): National Natural Science Foundation of China (NSFC)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.35 Å
• R-Value Free: 0.257 
• R-Value Work: 0.209 
• R-Value Observed: 0.213 

Literature

The sturecture of Legionella effector protein MavL with ADPR

Ouyang, S., Hongxin, G.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: gel filtration

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors.

Macromolecule Content

• Total Structure Weight: 81.91 kDa 
• Atom Count: 5,684 
• Modelled Residue Count: 721 
• Deposited Residue Count: 726 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
MavL	A, B	363	Legionella pneumophila	Mutation(s): 0  Gene Names: C3927_12725

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
AR6 (Subject of Investigation/LOI)	C [auth A], D [auth B]	[(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHYL [HYDROXY-[[(2R,3S,4R,5S)-3,4,5-TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL] HYDROGEN PHOSPHATE C15 H23 N5 O14 P2 SRNWOUGRCWSEMX-ZQSHOCFMSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.35 Å
• R-Value Free: 0.257 
• R-Value Work: 0.209 
• R-Value Observed: 0.213 
• Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 50.79	α = 90
b = 108.32	β = 90
c = 129.78	γ = 90

Software Package:

Software Name	Purpose
BUSTER	refinement
HKL-2000	data reduction
HKL-2000	data scaling
PHENIX	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2024-03-20 
Deposition Author(s): Ouyang, S., Hongxin, G.

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Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	82172287

Revision History  

• Version 1.0: 2024-03-20
  Type: Initial release