Download MendeleyStructures and neutralizing mechanisms of camel nanobodies targeting the receptor-binding domain of MERS-CoV spike glycoprotein
Tian, L., Wang, R., Zhang, L., Wang, X.To be published.
8IEE
Crystal structure of nanobody VHH-31 with MERS-CoV RBD
- PDB DOI: https://doi.org/10.2210/pdb8IEE/pdb
- Classification: VIRAL PROTEIN
- Organism(s): Middle East respiratory syndrome-related coronavirus, Camelus dromedarius
- Expression System: Trichoplusia ni, Homo sapiens
- Mutation(s): No
- Deposited: 2023-02-15 Released: 2024-02-28
- Funding Organization(s): Not funded
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 3.21 Å
- R-Value Free: 0.252
- R-Value Work: 0.243
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Spike protein S1 | A [auth B], C [auth A] | 229 | Middle East respiratory syndrome-related coronavirus | Mutation(s): 0 Gene Names: S |  |
UniProt | |||||
Find proteins for K9N5Q8 (Middle East respiratory syndrome-related coronavirus (isolate United Kingdom/H123990006/2012)) Explore K9N5Q8 Go to UniProtKB: K9N5Q8 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | K9N5Q8 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| VHH-31 | B [auth D], D [auth C] | 131 | Camelus dromedarius | Mutation(s): 0 |  |
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
| |||||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 3.21 Å
- R-Value Free: 0.252
- R-Value Work: 0.243
- Space Group: P 31 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 158.02 | α = 90 |
| b = 158.02 | β = 90 |
| c = 132.703 | γ = 120 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| HKL-2000 | data reduction |
| HKL-2000 | data scaling |
| PHASER | phasing |
| PDB_EXTRACT | data extraction |
Entry History & Funding Information
Deposition Data
| Funding Organization | Location | Grant Number |
|---|---|---|
| Not funded | -- |
Revision History (Full details and data files)
- Version 1.0: 2024-02-28
Type: Initial release
