8G0M

Structure of complex between TV6.6 and CD98hc ECD


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.25 Å
  • R-Value Free: 0.245 
  • R-Value Work: 0.204 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

CD98hc is a target for brain delivery of biotherapeutics.

Chew, K.S.Wells, R.C.Moshkforoush, A.Chan, D.Lechtenberg, K.J.Tran, H.L.Chow, J.Kim, D.J.Robles-Colmenares, Y.Srivastava, D.B.Tong, R.K.Tong, M.Xa, K.Yang, A.Zhou, Y.Akkapeddi, P.Annamalai, L.Bajc, K.Blanchette, M.Cherf, G.M.Earr, T.K.Gill, A.Huynh, D.Joy, D.Knight, K.N.Lac, D.Leung, A.W.Lexa, K.W.Liau, N.P.D.Becerra, I.Malfavon, M.McInnes, J.Nguyen, H.N.Lozano, E.I.Pizzo, M.E.Roche, E.Sacayon, P.Calvert, M.E.K.Daneman, R.Dennis, M.S.Duque, J.Gadkar, K.Lewcock, J.W.Mahon, C.S.Meisner, R.Solanoy, H.Thorne, R.G.Watts, R.J.Zuchero, Y.J.Y.Kariolis, M.S.

(2023) Nat Commun 14: 5053-5053

  • DOI: https://doi.org/10.1038/s41467-023-40681-4
  • Primary Citation of Related Structures:  
    8G0M

  • PubMed Abstract: 

    Brain exposure of systemically administered biotherapeutics is highly restricted by the blood-brain barrier (BBB). Here, we report the engineering and characterization of a BBB transport vehicle targeting the CD98 heavy chain (CD98hc or SLC3A2) of heterodimeric amino acid transporters (TV CD98hc ). The pharmacokinetic and biodistribution properties of a CD98hc antibody transport vehicle (ATV CD98hc ) are assessed in humanized CD98hc knock-in mice and cynomolgus monkeys. Compared to most existing BBB platforms targeting the transferrin receptor, peripherally administered ATV CD98hc demonstrates differentiated brain delivery with markedly slower and more prolonged kinetic properties. Specific biodistribution profiles within the brain parenchyma can be modulated by introducing Fc mutations on ATV CD98hc that impact FcγR engagement, changing the valency of CD98hc binding, and by altering the extent of target engagement with Fabs. Our study establishes TV CD98hc as a modular brain delivery platform with favorable kinetic, biodistribution, and safety properties distinct from previously reported BBB platforms.


  • Organizational Affiliation

    Denali Therapeutics, Inc., 161 Oyster Point Blvd., South San Francisco, CA, 94080, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
4F2 cell-surface antigen heavy chain425Homo sapiensMutation(s): 0 
Gene Names: SLC3A2MDU1
UniProt & NIH Common Fund Data Resources
Find proteins for P08195 (Homo sapiens)
Explore P08195 
Go to UniProtKB:  P08195
PHAROS:  P08195
GTEx:  ENSG00000168003 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP08195
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
TV 6.6 Fc fragment227synthetic constructMutation(s): 0 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations
Expand
  • Reference Sequence
Oligosaccharides

Help

Entity ID: 3
MoleculeChains Length2D Diagram Glycosylation3D Interactions
beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose
C
8N-Glycosylation
Glycosylation Resources
GlyTouCan:  G61334IA
GlyCosmos:  G61334IA
GlyGen:  G61334IA
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.25 Å
  • R-Value Free: 0.245 
  • R-Value Work: 0.204 
  • Space Group: C 2 2 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 136.152α = 90
b = 167.126β = 90
c = 83.677γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
XDSdata reduction
Aimlessdata scaling
PHASERphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Other privateUnited States--

Revision History  (Full details and data files)

  • Version 1.0: 2023-10-18
    Type: Initial release