8CHU

Crystal structure of human PURA repeat I-II K97E mutant


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.45 Å
  • R-Value Free: 0.272 
  • R-Value Work: 0.202 
  • R-Value Observed: 0.204 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

PURA syndrome-causing mutations impair PUR-domain integrity and affect P-body association.

Proske, M.Janowski, R.Bacher, S.Kang, H.S.Monecke, T.Koehler, T.Hutten, S.Tretter, J.Crois, A.Molitor, L.Varela-Rial, A.Fino, R.Donati, E.De Fabritiis, G.Dormann, D.Sattler, M.Niessing, D.

(2024) Elife 13

  • DOI: https://doi.org/10.7554/eLife.93561
  • Primary Citation of Related Structures:  
    8CHT, 8CHU, 8CHV, 8CHW

  • PubMed Abstract: 

    Mutations in the human PURA gene cause the neurodevelopmental PURA syndrome. In contrast to several other monogenetic disorders, almost all reported mutations in this nucleic acid-binding protein result in the full disease penetrance. In this study, we observed that patient mutations across PURA impair its previously reported co-localization with processing bodies. These mutations either destroyed the folding integrity, RNA binding, or dimerization of PURA. We also solved the crystal structures of the N- and C-terminal PUR domains of human PURA and combined them with molecular dynamics simulations and nuclear magnetic resonance measurements. The observed unusually high dynamics and structural promiscuity of PURA indicated that this protein is particularly susceptible to mutations impairing its structural integrity. It offers an explanation why even conservative mutations across PURA result in the full penetrance of symptoms in patients with PURA syndrome.


  • Organizational Affiliation

    Institute of Structural Biology, Molecular Targets and Therapeutics Center, Helmholtz Munich, Neuherberg, Germany.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Transcriptional activator protein Pur-alpha
A, B
158Homo sapiensMutation(s): 1 
Gene Names: PURAPUR1
UniProt & NIH Common Fund Data Resources
Find proteins for Q00577 (Homo sapiens)
Explore Q00577 
Go to UniProtKB:  Q00577
PHAROS:  Q00577
GTEx:  ENSG00000185129 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ00577
Sequence Annotations
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  • Reference Sequence
Small Molecules
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.45 Å
  • R-Value Free: 0.272 
  • R-Value Work: 0.202 
  • R-Value Observed: 0.204 
  • Space Group: I 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 40.02α = 90
b = 77.32β = 90
c = 225.38γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
PDB_EXTRACTdata extraction
XDSdata reduction
SCALAdata scaling
MOLREPphasing

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
German Research Foundation (DFG)Germany--

Revision History  (Full details and data files)

  • Version 1.0: 2024-02-21
    Type: Initial release
  • Version 1.1: 2024-05-08
    Changes: Database references