8C5R

Omicron B.1.1.529 2 RBD up conformation

PDB DOI: https://doi.org/10.2210/pdb8C5R/pdb
EM Map EMD-16441: EMDB EMDataResource

Classification: VIRAL PROTEIN
Organism(s): Alphacoronavirus
Expression System: Homo sapiens
Mutation(s): No

Deposited: 2023-01-10 Released: 2024-01-24
Deposition Author(s): Raghavan, S.S.R., Walker, M.R., Salanti, A., Barfod, L.K., Wang, K.T.
Funding Organization(s): Danish Council for Independent Research, The Carlsberg Foundation, Novo Nordisk Foundation

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.70 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Omicron B.1.1.529 2 RBD up conformation

Raghavan, S.S.R., Walker, M.R., Salanti, A., Barfod, L.K., Wang, K.T.

To be published.

Macromolecule Content

Total Structure Weight: 354.58 kDa
Atom Count: 24,969
Modelled Residue Count: 3,178
Deposited Residue Count: 3,180
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Spike glycoprotein	A, B, C	1,060	Alphacoronavirus	Mutation(s): 0
UniProt
Find proteins for P0DTC2 (Severe acute respiratory syndrome coronavirus 2) Explore P0DTC2 Go to UniProtKB: P0DTC2
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P0DTC2
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 3.70 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2024-01-24

Deposition Author(s):

Raghavan, S.S.R.

Funding Organization	Location	Grant Number
Danish Council for Independent Research	Denmark	118248
The Carlsberg Foundation	Denmark	CF20-0045
Novo Nordisk Foundation	Denmark	NNF170C0026778

Revision History (Full details and data files)

Version 1.0: 2024-01-24
Type: Initial release

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.