8BBL

SGL a GH20 family sulfoglycosidase

PDB DOI: https://doi.org/10.2210/pdb8BBL/pdb

Classification: HYDROLASE
Organism(s): Prevotella
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2022-10-13 Released: 2023-01-11
Deposition Author(s): Dong, M.D., Roth, C.R., Jin, Y.J.
Funding Organization(s): Wellcome Trust, Royal Society

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.71 Å
R-Value Free: 0.319
R-Value Work: 0.283

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Mechanistic and Structural Insights into the Specificity and Biological Functions of Bacterial Sulfoglycosidases

Zhang, Z., Dong, M., Zallot, R., Blackburn, G.M., Wang, N., Wang, C., Chen, L., Baumann, P., Wu, Z., Wang, Z., Fan, H., Roth, C., Jin, Y., He, Y.

(2022) ACS Catal

DOI: https://doi.org/10.1021/acscatal.2c05405

Macromolecule Content

Total Structure Weight: 796.2 kDa
Atom Count: 31,772
Modelled Residue Count: 4,017
Deposited Residue Count: 7,208
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Beta-N-acetylhexosaminidase	A B C D E A, B, C, D, E, F, G [auth H], H [auth G]	901	Prevotella	Mutation(s): 0 Gene Names: sgl EC: 3.2.1.52
UniProt
Find proteins for Q5MAH5 (Prevotella sp. RS2) Explore Q5MAH5 Go to UniProtKB: Q5MAH5
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q5MAH5
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.71 Å
R-Value Free: 0.319
R-Value Work: 0.283
Space Group: P 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 132.95	α = 90
b = 133.42	β = 90
c = 225.37	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
xia2	data reduction
xia2	data scaling
MOLREP	phasing

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2023-01-11

Deposition Author(s):

Funding Organization	Location	Grant Number
Wellcome Trust	United Kingdom	218568/Z/19/Z
Royal Society	United Kingdom	RG170406
Wellcome Trust	United Kingdom	209057/Z/17/Z

Revision History (Full details and data files)

Version 1.0: 2023-01-11
Type: Initial release
Version 1.1: 2024-05-01
Changes: Data collection, Refinement description

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.