8YEA

Room temperature structure of TsaGH11 determined by macromolecular crystallography

PDB DOI: https://doi.org/10.2210/pdb8YEA/pdb

Classification: HYDROLASE
Organism(s): Thermoanaerobacterium saccharolyticum
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2024-02-22 Released: 2024-03-06
Deposition Author(s): Nam, K.H.
Funding Organization(s): National Research Foundation (NRF, Korea)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.85 Å
R-Value Free: 0.256
R-Value Work: 0.183
R-Value Observed: 0.191

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Room temperature structure of TsaGH11 determined by macromolecular crystallography

Nam, K.H.

To be published.

Macromolecule Content

Total Structure Weight: 40.33 kDa
Atom Count: 2,842
Modelled Residue Count: 366
Deposited Residue Count: 368
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Endo-1,4-beta-xylanase	A, B	184	Thermoanaerobacterium saccharolyticum	Mutation(s): 0 Gene Names: Tsac_0897
UniProt
Find proteins for I3VTR8 (Thermoanaerobacterium saccharolyticum (strain DSM 8691 / JW/SL-YS485)) Explore I3VTR8 Go to UniProtKB: I3VTR8
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	I3VTR8
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.85 Å
R-Value Free: 0.256
R-Value Work: 0.183
R-Value Observed: 0.191
Space Group: P 4₃ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 69.896	α = 90
b = 69.896	β = 90
c = 170.428	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-2000	data reduction
HKL-2000	data scaling
MOLREP	phasing

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2024-03-06

Deposition Author(s):

Funding Organization	Location	Grant Number
National Research Foundation (NRF, Korea)	Korea, Republic Of	NRF-2021R1I1A1A01050838

Revision History (Full details and data files)

Version 1.0: 2024-03-06
Type: Initial release

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.