Download MendeleyCrystal structure of Paradendryphiella salina PL7C alginate lyase mutant H124
Wilkens, C.To be published.
8RBI
Crystal structure of Paradendryphiella salina PL7C alginate lyase mutant H124
- PDB DOI: https://doi.org/10.2210/pdb8RBI/pdb
- Classification: LYASE
- Organism(s): Paradendryphiella salina
- Expression System: Komagataella pastoris
- Mutation(s): Yes
- Deposited: 2023-12-04 Released: 2024-01-17
- Funding Organization(s): Not funded
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 0.98 Å
- R-Value Free: 0.149
- R-Value Work: 0.124
- R-Value Observed: 0.124
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Alginate lyase | 234 | Paradendryphiella salina | Mutation(s): 1 Gene Names: PsAlg7C |  | |
UniProt | |||||
Find proteins for A0A7I9C8Z1 (Paradendryphiella salina) Explore A0A7I9C8Z1 Go to UniProtKB: A0A7I9C8Z1 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A7I9C8Z1 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| PEG Query on PEG | B [auth A] | DI(HYDROXYETHYL)ETHER C4 H10 O3 MTHSVFCYNBDYFN-UHFFFAOYSA-N |  | ||
| NA Query on NA | C [auth A] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 0.98 Å
- R-Value Free: 0.149
- R-Value Work: 0.124
- R-Value Observed: 0.124
- Space Group: C 1 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 76.52 | α = 90 |
| b = 38.45 | β = 116.62 |
| c = 74.01 | γ = 90 |
| Software Name | Purpose |
|---|---|
| MxCuBE | data collection |
| PHENIX | refinement |
| XDS | data reduction |
| Coot | model building |
| PHASER | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2024-01-17 Deposition Author(s): Wilkens, C.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Not funded | -- |
Revision History (Full details and data files)
- Version 1.0: 2024-01-17
Type: Initial release
