8PUG

Structure of the immature HTLV-1 CA lattice from full-length Gag VLPs: CA-NTD refinement


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 5.90 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SUBTOMOGRAM AVERAGING 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Unconventional stabilization of the human T-cell leukemia virus type 1 immature Gag lattice.

Obr, M.Percipalle, M.Chernikova, D.Yang, H.Thader, A.Pinke, G.Porley, D.Mansky, L.M.Dick, R.A.Schur, F.K.

(2023) Biorxiv 

  • DOI: https://doi.org/10.1101/2023.07.24.548988
  • Primary Citation of Related Structures:  
    8PU6, 8PU7, 8PU8, 8PU9, 8PUA, 8PUB, 8PUC, 8PUD, 8PUE, 8PUF, 8PUG, 8PUH

  • PubMed Abstract: 

    Human T-cell leukemia virus type 1 (HTLV-1) has an atypical immature particle morphology compared to other retroviruses. This indicates that these particles are formed in a way that is unique. Here we report the results of cryo-electron tomography (cryo-ET) studies of HTLV-1 virus-like particles (VLPs) assembled in vitro , as well as derived from cells. This work shows that HTLV-1 employs an unconventional mechanism of Gag-Gag interactions to form the immature viral lattice. Analysis of high-resolution structural information from immature CA tubular arrays reveals that the primary stabilizing component in HTLV-1 is CA-NTD. Mutagenesis and biophysical analysis support this observation. This distinguishes HTLV-1 from other retroviruses, in which the stabilization is provided primarily by the CA-CTD. These results are the first to provide structural details of the quaternary arrangement of Gag for an immature deltaretrovirus, and this helps explain why HTLV-1 particles are morphologically distinct.


  • Organizational Affiliation

    Institute of Science and Technology Austria (ISTA), Klosterneuburg, Austria.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Gag polyprotein
A, B, C
429Human T-cell leukemia virus type IMutation(s): 0 
Gene Names: gag
UniProt
Find proteins for G9BL35 (Human T-cell leukemia virus type I)
Explore G9BL35 
Go to UniProtKB:  G9BL35
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupG9BL35
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 5.90 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SUBTOMOGRAM AVERAGING 
EM Software:
TaskSoftware PackageVersion
RECONSTRUCTIONWarp1.0.9

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Austrian Science FundAustriaP31445
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)United StatesR01 GM151775
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)United StatesR21 DE032878
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)United StatesR01AI147890

Revision History  (Full details and data files)

  • Version 1.0: 2023-08-23
    Type: Initial release