8K35

Structure of the bacteriophage lambda tail tip complex


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.44 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Structure of the siphophage neck-Tail complex suggests that conserved tail tip proteins facilitate receptor binding and tail assembly.

Xiao, H.Tan, L.Tan, Z.Zhang, Y.Chen, W.Li, X.Song, J.Cheng, L.Liu, H.

(2023) PLoS Biol 21: e3002441-e3002441

  • DOI: https://doi.org/10.1371/journal.pbio.3002441
  • Primary Citation of Related Structures:  
    8K35, 8K36, 8K37, 8K38, 8K39

  • PubMed Abstract: 

    Siphophages have a long, flexible, and noncontractile tail that connects to the capsid through a neck. The phage tail is essential for host cell recognition and virus-host cell interactions; moreover, it serves as a channel for genome delivery during infection. However, the in situ high-resolution structure of the neck-tail complex of siphophages remains unknown. Here, we present the structure of the siphophage lambda "wild type," the most widely used, laboratory-adapted fiberless mutant. The neck-tail complex comprises a channel formed by stacked 12-fold and hexameric rings and a 3-fold symmetrical tip. The interactions among DNA and a total of 246 tail protein molecules forming the tail and neck have been characterized. Structural comparisons of the tail tips, the most diversified region across the lambda and other long-tailed phages or tail-like machines, suggest that their tail tip contains conserved domains, which facilitate tail assembly, receptor binding, cell adsorption, and DNA retaining/releasing. These domains are distributed in different tail tip proteins in different phages or tail-like machines. The side tail fibers are not required for the phage particle to orient itself vertically to the surface of the host cell during attachment.


  • Organizational Affiliation

    Institute of Interdisciplinary Studies, Key Laboratory for Matter Microstructure and Function of Hunan Province, Key Laboratory of Low-dimensional Quantum Structures and Quantum Control, School of Physics and Electronics, Hunan Normal University, Changsha, China.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Tip attachment protein JA [auth I],
B [auth A],
C [auth B]
1,132Escherichia phage LambdaMutation(s): 0 
UniProt
Find proteins for P03749 (Escherichia phage lambda)
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Go to UniProtKB:  P03749
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UniProt GroupP03749
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Tail tip protein LD [auth J],
E [auth G],
F [auth N]
232Escherichia phage LambdaMutation(s): 0 
UniProt
Find proteins for P03738 (Escherichia phage lambda)
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Go to UniProtKB:  P03738
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UniProt GroupP03738
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Tail tip protein M109Escherichia phage LambdaMutation(s): 0 
UniProt
Find proteins for P03737 (Escherichia phage lambda)
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UniProt GroupP03737
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Tail tip assembly protein IM [auth x],
N [auth K],
O [auth Q]
223Escherichia phage LambdaMutation(s): 0 
UniProt
Find proteins for P03730 (Escherichia phage lambda)
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UniProt GroupP03730
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
Tail tube protein246Escherichia phage LambdaMutation(s): 0 
UniProt
Find proteins for P03733 (Escherichia phage lambda)
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  • Reference Sequence
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
Tape measure proteinV [auth P],
W [auth M],
X [auth S]
853Escherichia phage LambdaMutation(s): 0 
UniProt
Find proteins for P03736 (Escherichia phage lambda)
Explore P03736 
Go to UniProtKB:  P03736
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UniProt GroupP03736
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.44 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of China (NSFC)China12034006
National Natural Science Foundation of China (NSFC)China32071209
National Natural Science Foundation of China (NSFC)China31971122
National Natural Science Foundation of China (NSFC)China32200994

Revision History  (Full details and data files)

  • Version 1.0: 2023-11-15
    Type: Initial release
  • Version 1.1: 2024-01-17
    Changes: Database references