8HSN

Crystal structure of DFA I-forming Inulin Lyase from Streptomyces peucetius subsp. caesius ATCC 27952

PDB DOI: https://doi.org/10.2210/pdb8HSN/pdb

Classification: LYASE
Organism(s): Streptomyces peucetius subsp. caesius ATCC 27952
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2022-12-20 Released: 2023-12-27
Deposition Author(s): Cheng, M., Rao, Y.J., Mu, W.M.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.69 Å
R-Value Free: 0.151
R-Value Work: 0.137
R-Value Observed: 0.137

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Crystal structure of DFA I-forming Inulin Lyase from Streptomyces peucetius subsp. caesius ATCC 27952

Mu, W.M., Rao, Y.J., Cheng, M.

To be published.

Macromolecule Content

Total Structure Weight: 132.53 kDa
Atom Count: 9,750
Modelled Residue Count: 1,184
Deposited Residue Count: 1,200
Unique protein chains: 1

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Fructotransferase	A, B, C	400	Streptomyces peucetius subsp. caesius ATCC 27952	Mutation(s): 0 Gene Names: CGZ69_03210 EC: 4.2.2.17
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 5 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
1PE Query on 1PE Download Ideal Coordinates CCD File SDF format, chain J [auth A] SDF format, chain Y [auth B] MOL2 format, chain J [auth A] MOL2 format, chain Y [auth B]	J [auth A], Y [auth B]	PENTAETHYLENE GLYCOL C₁₀ H₂₂ O₆ JLFNLZLINWHATN-UHFFFAOYSA-N		Interactions Focus chain J [auth A] Focus chain Y [auth B] Interactions & Density Focus chain J [auth A] Focus chain Y [auth B]
PEG Query on PEG Download Ideal Coordinates CCD File SDF format, chain DA [auth B] SDF format, chain P [auth A] SDF format, chain W [auth B] SDF format, chain WA [auth C] SDF format, chain Z [auth B] MOL2 format, chain DA [auth B] MOL2 format, chain P [auth A] MOL2 format, chain W [auth B] MOL2 format, chain WA [auth C] MOL2 format, chain Z [auth B]	DA [auth B], P [auth A], W [auth B], WA [auth C], Z [auth B]	DI(HYDROXYETHYL)ETHER C₄ H₁₀ O₃ MTHSVFCYNBDYFN-UHFFFAOYSA-N		Interactions Focus chain DA [auth B] Focus chain P [auth A] Focus chain W [auth B] Focus chain WA [auth C] Focus chain Z [auth B] Interactions & Density Focus chain DA [auth B] Focus chain P [auth A] Focus chain W [auth B] Focus chain WA [auth C] Focus chain Z [auth B]
GOL Query on GOL Download Ideal Coordinates CCD File SDF format, chain AA [auth B] SDF format, chain BA [auth B] SDF format, chain CA [auth B] SDF format, chain D [auth A] SDF format, chain E [auth A] SDF format, chain JA [auth C] SDF format, chain KA [auth C] SDF format, chain L [auth A] SDF format, chain M [auth A] SDF format, chain N [auth A] SDF format, chain O [auth A] SDF format, chain QA [auth C] SDF format, chain RA [auth C] SDF format, chain SA [auth C] SDF format, chain TA [auth C] SDF format, chain UA [auth C] SDF format, chain V [auth B] SDF format, chain VA [auth C] MOL2 format, chain AA [auth B] MOL2 format, chain BA [auth B] MOL2 format, chain CA [auth B] MOL2 format, chain D [auth A] MOL2 format, chain E [auth A] MOL2 format, chain JA [auth C] MOL2 format, chain KA [auth C] MOL2 format, chain L [auth A] MOL2 format, chain M [auth A] MOL2 format, chain N [auth A] MOL2 format, chain O [auth A] MOL2 format, chain QA [auth C] MOL2 format, chain RA [auth C] MOL2 format, chain SA [auth C] MOL2 format, chain TA [auth C] MOL2 format, chain UA [auth C] MOL2 format, chain V [auth B] MOL2 format, chain VA [auth C]	AA [auth B] BA [auth B] CA [auth B] D [auth A] E [auth A] AA [auth B], BA [auth B], CA [auth B], D [auth A], E [auth A], JA [auth C], KA [auth C], L [auth A], M [auth A], N [auth A], O [auth A], QA [auth C], RA [auth C], SA [auth C], TA [auth C], UA [auth C], V [auth B], VA [auth C]	GLYCEROL C₃ H₈ O₃ PEDCQBHIVMGVHV-UHFFFAOYSA-N		Interactions Focus chain AA [auth B] Focus chain BA [auth B] Focus chain CA [auth B] Focus chain D [auth A] Focus chain E [auth A] Focus chain JA [auth C] Focus chain KA [auth C] Focus chain L [auth A] Focus chain M [auth A] Focus chain N [auth A] Focus chain O [auth A] Focus chain QA [auth C] Focus chain RA [auth C] Focus chain SA [auth C] Focus chain TA [auth C] Focus chain UA [auth C] Focus chain V [auth B] Focus chain VA [auth C] Interactions & Density Focus chain AA [auth B] Focus chain BA [auth B] Focus chain CA [auth B] Focus chain D [auth A] Focus chain E [auth A] Focus chain JA [auth C] Focus chain KA [auth C] Focus chain L [auth A] Focus chain M [auth A] Focus chain N [auth A] Focus chain O [auth A] Focus chain QA [auth C] Focus chain RA [auth C] Focus chain SA [auth C] Focus chain TA [auth C] Focus chain UA [auth C] Focus chain V [auth B] Focus chain VA [auth C]
2PO Query on 2PO Download Ideal Coordinates CCD File SDF format, chain IA [auth C] SDF format, chain R [auth A] SDF format, chain T [auth B] MOL2 format, chain IA [auth C] MOL2 format, chain R [auth A] MOL2 format, chain T [auth B]	IA [auth C], R [auth A], T [auth B]	PHOSPHONATE H O₃ P ABLZXFCXXLZCGV-UHFFFAOYSA-L		Interactions Focus chain IA [auth C] Focus chain R [auth A] Focus chain T [auth B] Interactions & Density Focus chain IA [auth C] Focus chain R [auth A] Focus chain T [auth B]
EDO Query on EDO Download Ideal Coordinates CCD File SDF format, chain AB [auth C] SDF format, chain EA [auth B] SDF format, chain F [auth A] SDF format, chain FA [auth B] SDF format, chain G [auth A] SDF format, chain GA [auth B] SDF format, chain H [auth A] SDF format, chain HA [auth B] SDF format, chain I [auth A] SDF format, chain K [auth A] SDF format, chain LA [auth C] SDF format, chain MA [auth C] SDF format, chain NA [auth C] SDF format, chain OA [auth C] SDF format, chain PA [auth C] SDF format, chain Q [auth A] SDF format, chain S [auth B] SDF format, chain U [auth B] SDF format, chain X [auth B] SDF format, chain XA [auth C] SDF format, chain YA [auth C] SDF format, chain ZA [auth C] MOL2 format, chain AB [auth C] MOL2 format, chain EA [auth B] MOL2 format, chain F [auth A] MOL2 format, chain FA [auth B] MOL2 format, chain G [auth A] MOL2 format, chain GA [auth B] MOL2 format, chain H [auth A] MOL2 format, chain HA [auth B] MOL2 format, chain I [auth A] MOL2 format, chain K [auth A] MOL2 format, chain LA [auth C] MOL2 format, chain MA [auth C] MOL2 format, chain NA [auth C] MOL2 format, chain OA [auth C] MOL2 format, chain PA [auth C] MOL2 format, chain Q [auth A] MOL2 format, chain S [auth B] MOL2 format, chain U [auth B] MOL2 format, chain X [auth B] MOL2 format, chain XA [auth C] MOL2 format, chain YA [auth C] MOL2 format, chain ZA [auth C]	AB [auth C] EA [auth B] F [auth A] FA [auth B] G [auth A] AB [auth C], EA [auth B], F [auth A], FA [auth B], G [auth A], GA [auth B], H [auth A], HA [auth B], I [auth A], K [auth A], LA [auth C], MA [auth C], NA [auth C], OA [auth C], PA [auth C], Q [auth A], S [auth B], U [auth B], X [auth B], XA [auth C], YA [auth C], ZA [auth C]	1,2-ETHANEDIOL C₂ H₆ O₂ LYCAIKOWRPUZTN-UHFFFAOYSA-N		Interactions Focus chain AB [auth C] Focus chain EA [auth B] Focus chain F [auth A] Focus chain FA [auth B] Focus chain G [auth A] Focus chain GA [auth B] Focus chain H [auth A] Focus chain HA [auth B] Focus chain I [auth A] Focus chain K [auth A] Focus chain LA [auth C] Focus chain MA [auth C] Focus chain NA [auth C] Focus chain OA [auth C] Focus chain PA [auth C] Focus chain Q [auth A] Focus chain S [auth B] Focus chain U [auth B] Focus chain X [auth B] Focus chain XA [auth C] Focus chain YA [auth C] Focus chain ZA [auth C] Interactions & Density Focus chain AB [auth C] Focus chain EA [auth B] Focus chain F [auth A] Focus chain FA [auth B] Focus chain G [auth A] Focus chain GA [auth B] Focus chain H [auth A] Focus chain HA [auth B] Focus chain I [auth A] Focus chain K [auth A] Focus chain LA [auth C] Focus chain MA [auth C] Focus chain NA [auth C] Focus chain OA [auth C] Focus chain PA [auth C] Focus chain Q [auth A] Focus chain S [auth B] Focus chain U [auth B] Focus chain X [auth B] Focus chain XA [auth C] Focus chain YA [auth C] Focus chain ZA [auth C]