8HCJ

Structure of GH43 family enzyme, Xylan 1, 4 Beta- xylosidase from pseudopedobacter saltans

PDB DOI: https://doi.org/10.2210/pdb8HCJ/pdb

Classification: HYDROLASE
Organism(s): Pseudopedobacter saltans DSM 12145
Expression System: Escherichia coli BL21
Mutation(s): No

Deposited: 2022-11-01 Released: 2023-11-15
Deposition Author(s): Vishwakarma, P., Sachdeva, E., Goyal, A., Ethayathulla, A.S., Das, U., Kaur, P.
Funding Organization(s): Department of Biotechnology (DBT, India)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.57 Å
R-Value Free: 0.209
R-Value Work: 0.163

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

Structure of GH43 family enzyme, Xylan 1, 4 Beta- xylosidase from pseudopedobacter saltans

Vishwakarma, P., Kaur, P., Sachdeva, E., Ethayathulla, A.S., Das, U., Goyal, A.

To be published.

Macromolecule Content

Total Structure Weight: 407.15 kDa
Atom Count: 28,771
Modelled Residue Count: 3,461
Deposited Residue Count: 3,624
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Xylan 1,4-beta-xylosidase	A [auth D] B [auth E] C [auth H] D [auth A] E [auth B] A [auth D], B [auth E], C [auth H], D [auth A], E [auth B], F [auth G], G [auth C], H [auth F]	453	Pseudopedobacter saltans DSM 12145	Mutation(s): 0 Gene Names: Pedsa_2569 EC: 3.2.1.37
UniProt
Find proteins for F0S5E9 (Pseudopedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 / CCUG 39354 / LMG 10337 / NBRC 100064 / NCIMB 13643)) Explore F0S5E9 Go to UniProtKB: F0S5E9
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	F0S5E9
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
CA (Subject of Investigation/LOI) Query on CA Download Ideal Coordinates CCD File SDF format, chain I [auth D] SDF format, chain J [auth D] SDF format, chain K [auth E] SDF format, chain L [auth E] SDF format, chain M [auth H] SDF format, chain N [auth H] SDF format, chain O [auth A] SDF format, chain P [auth A] SDF format, chain Q [auth B] SDF format, chain R [auth B] SDF format, chain S [auth G] SDF format, chain T [auth G] SDF format, chain U [auth C] SDF format, chain V [auth C] SDF format, chain W [auth F] SDF format, chain X [auth F] MOL2 format, chain I [auth D] MOL2 format, chain J [auth D] MOL2 format, chain K [auth E] MOL2 format, chain L [auth E] MOL2 format, chain M [auth H] MOL2 format, chain N [auth H] MOL2 format, chain O [auth A] MOL2 format, chain P [auth A] MOL2 format, chain Q [auth B] MOL2 format, chain R [auth B] MOL2 format, chain S [auth G] MOL2 format, chain T [auth G] MOL2 format, chain U [auth C] MOL2 format, chain V [auth C] MOL2 format, chain W [auth F] MOL2 format, chain X [auth F]	I [auth D] J [auth D] K [auth E] L [auth E] M [auth H] I [auth D], J [auth D], K [auth E], L [auth E], M [auth H], N [auth H], O [auth A], P [auth A], Q [auth B], R [auth B], S [auth G], T [auth G], U [auth C], V [auth C], W [auth F], X [auth F]	CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N		Interactions Focus chain I [auth D] Focus chain J [auth D] Focus chain K [auth E] Focus chain L [auth E] Focus chain M [auth H] Focus chain N [auth H] Focus chain O [auth A] Focus chain P [auth A] Focus chain Q [auth B] Focus chain R [auth B] Focus chain S [auth G] Focus chain T [auth G] Focus chain U [auth C] Focus chain V [auth C] Focus chain W [auth F] Focus chain X [auth F] Interactions & Density Focus chain I [auth D] Focus chain J [auth D] Focus chain K [auth E] Focus chain L [auth E] Focus chain M [auth H] Focus chain N [auth H] Focus chain O [auth A] Focus chain P [auth A] Focus chain Q [auth B] Focus chain R [auth B] Focus chain S [auth G] Focus chain T [auth G] Focus chain U [auth C] Focus chain V [auth C] Focus chain W [auth F] Focus chain X [auth F]