8GMO

Bacteriophage T4 capsid shell containing 9DE insertions into the gp23* major capsid protein subunits

  • Classification: VIRUS LIKE PARTICLE
  • Organism(s): Tequatrovirus T4
  • Expression System: Escherichia coli
  • Mutation(s): No 

  • Deposited: 2023-03-26 Released: 2023-05-10 
  • Deposition Author(s): Fokine, A., Rao, V.B.
  • Funding Organization(s): National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID), National Science Foundation (NSF, United States)

Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.90 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.1 of the entry. See complete history


Literature

Design of bacteriophage T4-based artificial viral vectors for human genome remodeling.

Zhu, J.Batra, H.Ananthaswamy, N.Mahalingam, M.Tao, P.Wu, X.Guo, W.Fokine, A.Rao, V.B.

(2023) Nat Commun 14: 2928-2928

  • DOI: https://doi.org/10.1038/s41467-023-38364-1
  • Primary Citation of Related Structures:  
    8GMO

  • PubMed Abstract: 

    Designing artificial viral vectors (AVVs) programmed with biomolecules that can enter human cells and carry out molecular repairs will have broad applications. Here, we describe an assembly-line approach to build AVVs by engineering the well-characterized structural components of bacteriophage T4. Starting with a 120 × 86 nm capsid shell that can accommodate 171-Kbp DNA and thousands of protein copies, various combinations of biomolecules, including DNAs, proteins, RNAs, and ribonucleoproteins, are externally and internally incorporated. The nanoparticles are then coated with cationic lipid to enable efficient entry into human cells. As proof of concept, we assemble a series of AVVs designed to deliver full-length dystrophin gene or perform various molecular operations to remodel human genome, including genome editing, gene recombination, gene replacement, gene expression, and gene silencing. These large capacity, customizable, multiplex, and all-in-one phage-based AVVs represent an additional category of nanomaterial that could potentially transform gene therapies and personalized medicine.


  • Organizational Affiliation

    Bacteriophage Medical Research Center, Department of Biology, The Catholic University of America, Washington, DC, 20064, USA.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Mature major capsid protein465Tequatrovirus T4Mutation(s): 0 
Gene Names: gp23
UniProt
Find proteins for P04535 (Enterobacteria phage T4)
Explore P04535 
Go to UniProtKB:  P04535
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP04535
Sequence Annotations
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  • Reference Sequence
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Mature capsid vertex proteinAB [auth D],
K [auth A],
UB [auth a],
YA [auth B],
ZA [auth C]
415Tequatrovirus T4Mutation(s): 0 
Gene Names: 24
UniProt
Find proteins for P19896 (Enterobacteria phage T4)
Explore P19896 
Go to UniProtKB:  P19896
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP19896
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.90 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 
EM Software:
TaskSoftware PackageVersion
MODEL REFINEMENTPHENIX
RECONSTRUCTIONRELION3.1

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)United StatesAI111538
National Institutes of Health/National Institute Of Allergy and Infectious Diseases (NIH/NIAID)United StatesAI081726
National Science Foundation (NSF, United States)United StatesMCB-0923873

Revision History  (Full details and data files)

  • Version 1.0: 2023-05-10
    Type: Initial release
  • Version 1.1: 2023-06-14
    Changes: Database references